#include <ProcessByBrick.h>

Inheritance diagram for Isis::ProcessByBrick:

Collaboration diagram for Isis::ProcessByBrick:

Public Types
enum	IOCubes { InPlace, InputOutput, InputOutputList }

enum	ProcessingDirection { LinesFirst, BandsFirst }

Public Member Functions
	ProcessByBrick ()
	Constructs a ProcessByBrick object. More...

virtual	~ProcessByBrick ()
	Destroys the ProcessByBrick object. More...

Cube *	SetInputCube (const QString &parameter, int requirements=0)
	Opens an input cube specified by the user and verifies requirements are met. More...

Cube *	SetInputCube (const QString &fname, const CubeAttributeInput &att, int requirements=0)
	Opens an input cube specified by the user, sets the attributes, and verifies requirements are met. More...

virtual void	SetBricks (IOCubes cn)

void	VerifyCubes (IOCubes cn)
	Verifies the dimensions of the input/output cubes. More...

void	SetBrickSize (int ns, int nl, int nb)
	Sets the input and output bricks sizes to the given number of samples, lines, and bands. More...

void	SetInputBrickSize (int ns, int nl, int nb)
	Sets the size of all input bricks. More...

void	SetInputBrickSize (int ns, int nl, int nb, int cube)
	Sets the brick size of the specified cube. More...

void	SetOutputBrickSize (int ns, int nl, int nb)
	Sets the size of all output bricks. More...

void	SetOutputBrickSize (int ns, int nl, int nb, int cube)
	Sets the brick size of the specified output cube. More...

virtual Cube *	SetOutputCube (const QString &fname, const CubeAttributeOutput &att)
	Create the output file. More...

void	SetProcessingDirection (ProcessingDirection direction)
	Set the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst). More...

ProcessingDirection	GetProcessingDirection ()
	Returns the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst). More...

void	SetOutputRequirements (int outputRequirements)

void	SetWrap (bool wrap)
	This wrapping option only applys when there are two or more input cubes. More...

bool	Wraps ()
	Returns true if the wrapping option is enabled. More...

virtual void	StartProcess (void funct(Buffer &in))
	Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube. More...

virtual void	StartProcess (std::function< void(Buffer &in)> funct)
	Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube. More...

virtual void	StartProcess (std::function< void(Buffer &in, Buffer &out)> funct)
	Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube. More...

virtual void	StartProcess (void funct(Buffer &in, Buffer &out))
	Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube. More...

virtual void	StartProcess (void funct(std::vector< Buffer > &in, std::vector< Buffer > &out))
	Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube. More...

void	EndProcess ()
	End the processing sequence and cleans up by closing cubes, freeing memory, etc. More...

void	Finalize ()
	Cleans up by closing cubes and freeing memory. More...

template<typename Functor >
void	ProcessCubeInPlace (const Functor &functor, bool threaded=true)
	Operate over a single cube (either input or output). More...

template<typename Functor >
void	ProcessCube (const Functor &functor, bool threaded=true)
	Operate over a single input cube creating a separate output cube. More...

template<typename Functor >
void	ProcessCubes (const Functor &functor, bool threaded=true)
	Operate over an arbitrary number of input cubes given an arbitrary number of output cubes. More...

virtual Isis::Cube *	SetInputCube (const QString &parameter, const int requirements=0)
	Opens an input cube specified by the user and verifies requirements are met. More...

virtual Isis::Cube *	SetInputCube (const QString &fname, const Isis::CubeAttributeInput &att, int requirements=0)
	Opens an input cube specified by the programmer and verifies requirements are met. More...

virtual void	SetInputCube (Isis::Cube *inCube)
	Set the InputCube vector to an opened Cube which was dynamically allocated. More...

virtual void	StartProcess (void funct())
	In the base class, this method will invoked a user-specified function exactly one time. More...

virtual void	SetInputCube (Isis::Cube *inCube)
	Set the InputCube vector to an opened Cube which was dynamically allocated. More...

virtual Isis::Cube *	SetOutputCube (const QString &parameter)
	Allocates a user-specified output cube whose size matches the first input cube. More...

virtual Isis::Cube *	SetOutputCube (const QString &parameter, const int nsamps, const int nlines, const int nbands=1)
	Allocates a user specified output cube whose size is specified by the programmer. More...

virtual Isis::Cube *	SetOutputCube (const QString &fname, const Isis::CubeAttributeOutput &att, const int nsamps, const int nlines, const int nbands=1)
	Allocates a output cube whose name and size is specified by the programmer. More...

void	AddInputCube (Cube *cube, bool owned=true)

void	AddOutputCube (Cube *cube, bool owned=true)

void	ClearCubes ()
	Close owned cubes from the list and clear the list. More...

void	ClearInputCubes ()
	Close owned input cubes from the list and clear the list. More...

void	ClearOutputCubes ()
	Close owned output cubes from the list and clear the list. More...

void	PropagateLabels (const bool prop)
	This method allows the programmer to turn on/off the propagation of labels from the 1st input cube to any of the output cubes. More...

void	PropagateLabels (const QString &cube)
	This method allows the programmer to propagate labels from a specific secondary cube. More...

void	PropagateTables (const bool prop)
	This method allows the programmer to propagate input tables to the output cube (default is true) More...

void	PropagateTables (const QString &fromName, const QList< QString > &tableNames=QList< QString >())
	Propagate the tables from the cube with the given filename to the output cube. More...

void	PropagatePolygons (const bool prop)
	This method allows the programmer to propagate input blobs to the output cube (default is true) More...

void	PropagateHistory (const bool prop)
	This method allows the programmer to propagate history to the output cube (default is true) More...

void	PropagateOriginalLabel (const bool prop)
	This method allows the programmer to propagate original labels to the output cube (default is true) More...

Isis::Progress *	Progress ()
	This method returns a pointer to a Progress object. More...

QString	MissionData (const QString &mission, const QString &file, bool highestVersion=false)
	This method reads the mission specific data directory from the user preference file, makes sure that mission is available in the Isis installation, and the attaches the provided input file to the directory in order to create a full file specification. More...

void	WriteHistory (Cube &cube)
	Writes out the History blob to the cube. More...

void	CalculateStatistics ()
	Calculates and stores off statistics on every band of every cube added to this process via the SetInputCube method. More...

std::vector< Isis::Statistics * >	BandStatistics (const unsigned index)
	Get the vector of Statistics objects for each band separately of a specified input cube. More...

Isis::Statistics *	CubeStatistics (const unsigned index)
	Get the Statistics object for all bands of a specified input cube. More...

Protected Attributes
Isis::Progress *	p_progress
	Pointer to a Progress object. More...

bool	p_propagateLabels
	Flag indicating if labels are be propagated to output cubes. More...

bool	p_propagateTables
	Flag indicating if tables are be propagated to output cubes. More...

bool	p_propagatePolygons
	Flag indicating if blobs are be propagated to output cubes. More...

bool	p_propagateHistory
	Flag indicating if history is to be propagated to output cubes. More...

bool	p_propagateOriginalLabel
	Flag indicating if original lable is to be propagated to output cubes. More...

std::vector< std::vector< Isis::Statistics *> >	p_bandStats
	Holds the calculated statistics for each band separately of every input cubei after the CalculateStatistics method is called. More...

std::vector< Isis::Statistics *>	p_cubeStats
	Holds the calculated statistics for every band together of every input cubei after the CalculateStatistics method is called. More...

std::vector< Isis::Cube * >	InputCubes
	A vector of pointers to opened Cube objects. More...

std::vector< Isis::Cube * >	OutputCubes
	A vector of pointers to allocated Cube objects. More...

QSet< Isis::Cube * > *	m_ownedCubes
	A list of cubes owned by this instant. More...

Detailed Description

Process cubes by brick.

This is the processing class used to move a brick through cube data. This class allows only one input cube and one output cube or one input cube. If the brick size does not evenly divide into the image the brick will be padded with Null pixels as it falls off the right and/or bottom edge of the image. The brick shape is only spatial-oriented with one band of data.

Author: 2006-03-24 Jacob Danton

Member Enumeration Documentation

◆ IOCubes

enum Isis::ProcessByBrick::IOCubes

Enumerator
InPlace
InputOutput
InputOutputList

◆ ProcessingDirection

enum Isis::ProcessByBrick::ProcessingDirection

Enumerator
LinesFirst
BandsFirst

Constructor & Destructor Documentation

◆ ProcessByBrick()

Isis::ProcessByBrick::ProcessByBrick ( )

Constructs a ProcessByBrick object.

◆ ~ProcessByBrick()

Isis::ProcessByBrick::~ProcessByBrick ( )

virtual

Destroys the ProcessByBrick object.

Member Function Documentation

◆ AddInputCube()

void Isis::Process::AddInputCube	(	Cube *	cube,
		bool	owned = `true`
	)

inherited

◆ AddOutputCube()

void Isis::Process::AddOutputCube	(	Cube *	cube,
		bool	owned = `true`
	)

inherited

◆ BandStatistics()

std::vector<Isis::Statistics *> Isis::Process::BandStatistics ( const unsigned index )

inlineinherited

Get the vector of Statistics objects for each band separately of a specified input cube.

Parameters

index The index of the input cube in InputCubes

Returns: vector<Statistics*> A list of statistics ordered by band

References Isis::Process::p_bandStats.

◆ CalculateStatistics()

void Isis::Process::CalculateStatistics ( )

inherited

Calculates and stores off statistics on every band of every cube added to this process via the SetInputCube method.

The newly calculated statistics are stored in two ways: as a vector where each entry is a single Statistics object for every band of a particular input cube, and as a vector where each entry is a vector of Statistics objects, for each band separately, of a particular input cube.

References Isis::Statistics::AddData(), Isis::Cube::bandCount(), Isis::Progress::CheckStatus(), Isis::Buffer::DoubleBuffer(), Isis::Cube::lineCount(), Isis::Cube::read(), Isis::LineManager::SetLine(), Isis::Progress::SetMaximumSteps(), Isis::Progress::SetText(), Isis::Buffer::size(), and Isis::toString().

◆ ClearCubes()

void Isis::Process::ClearCubes ( )

inherited

Close owned cubes from the list and clear the list.

◆ ClearInputCubes()

void Isis::Process::ClearInputCubes ( )

inherited

Close owned input cubes from the list and clear the list.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ ClearOutputCubes()

void Isis::Process::ClearOutputCubes ( )

inherited

Close owned output cubes from the list and clear the list.

◆ CubeStatistics()

Isis::Statistics* Isis::Process::CubeStatistics ( const unsigned index )

inlineinherited

Get the Statistics object for all bands of a specified input cube.

Parameters

index The index of the input cube in InputCubes

Returns: Statistics* Collections of statistics gathered on all bands

References Isis::Process::p_cubeStats.

◆ EndProcess()

void Isis::ProcessByBrick::EndProcess ( )

virtual

End the processing sequence and cleans up by closing cubes, freeing memory, etc.

Deprecated:: Please use Finalize()

Reimplemented from Isis::Process.

Reimplemented in Isis::ProcessByTile.

Referenced by Isis::Equalization::applyCorrection(), Isis::Equalization::calculateBandStatistics(), Isis::ImageImporter::import(), Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ Finalize()

void Isis::ProcessByBrick::Finalize ( )

virtual

Cleans up by closing cubes and freeing memory.

Reimplemented from Isis::Process.

Reimplemented in Isis::ProcessByTile.

Referenced by Isis::SpectralDefinition2D::SpectralDefinition2D().

◆ GetProcessingDirection()

ProcessByBrick::ProcessingDirection Isis::ProcessByBrick::GetProcessingDirection ( )

Returns the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst).

The default is to process all lines of a band first.

Returns: The selected enumerated processing direction

◆ MissionData()

QString Isis::Process::MissionData	(	const QString &	mission,
		const QString &	file,
		bool	highestVersion = `false`
	)

inherited

This method reads the mission specific data directory from the user preference file, makes sure that mission is available in the Isis installation, and the attaches the provided input file to the directory in order to create a full file specification.

Parameters

mission	Name of the mission data directory
file	Name of the file to attach to the end of the directory
highestVersion	If set to true the method will return the highest version number of the given file. Therefore, file must contain question marks such as "file???.dat". See the FileName class for more information on versioned files. Defaults to false.

References _FILEINFO_, Isis::FileName::expanded(), Isis::FileName::fileExists(), Isis::PvlObject::findGroup(), Isis::FileName::highestVersion(), and Isis::Preference::Preferences().

◆ ProcessCube()

template<typename Functor >

void Isis::ProcessByBrick::ProcessCube	(	const Functor &	functor,
		bool	threaded = `true`
	)

inline

Operate over a single input cube creating a separate output cube.

The functor you pass in will be called for every position in the cube. If threaded is true, there is no guarantee to the sequence or timing of the functor's calls.

If you are using a function, the prototype should look like: void SomeFunc(Buffer &inputData, Buffer &outputData); If you are using a functor, the () operator should look like: void operator()(Buffer &inputData, Buffer &outputData) const;

When threaded is true, your function (or functor's () operator) must be thread safe. Please document your function appropriately if it is thread safe.

Parameters

functor	The processing function or functor which does your desired calculations.
threaded	True if multi-threading is supported, false otherwise. Sequential calling of the functor is guaranteed if this is false.

References Isis::Process::InputCubes, and Isis::Process::OutputCubes.

Referenced by Isis::ProcessBySample::ProcessCube(), Isis::ProcessByTile::ProcessCube(), Isis::ProcessBySpectra::ProcessCube(), and Isis::ProcessByLine::ProcessCube().

◆ ProcessCubeInPlace()

template<typename Functor >

void Isis::ProcessByBrick::ProcessCubeInPlace	(	const Functor &	functor,
		bool	threaded = `true`
	)

inline

Operate over a single cube (either input or output).

The functor you pass in will be called for every position in the cube. If threaded is true, there is no guarantee to the sequence or timing of the functor's calls.

If you are using a function, the prototype should look like: void SomeFunc(Buffer &); If you are using a functor, the () operator should look like: void operator()(Buffer &) const;

When threaded is true, your function (or functor's () operator) must be thread safe. Please document your function appropriately if it is thread safe.

Parameters

functor	The processing function or functor which does your desired calculations.
threaded	True if multi-threading is supported, false otherwise. Sequential calling of the functor is guaranteed if this is false.

References Isis::Brick::Bricks(), and Isis::Cube::isReadWrite().

Referenced by Isis::ProcessBySample::ProcessCubeInPlace(), Isis::ProcessByTile::ProcessCubeInPlace(), Isis::ProcessBySpectra::ProcessCubeInPlace(), and Isis::ProcessByLine::ProcessCubeInPlace().

◆ ProcessCubes()

template<typename Functor >

void Isis::ProcessByBrick::ProcessCubes	(	const Functor &	functor,
		bool	threaded = `true`
	)

inline

Operate over an arbitrary number of input cubes given an arbitrary number of output cubes.

The functor you pass in will be called for every position in the largest output cube. If threaded is true, there is no guarantee to the sequence or timing of the functor's calls.

If you are using a function, the prototype should look like: void SomeFunc(std::vector<Buffer *> &inputData, std::vector<Buffer *> &outputData); If you are using a functor, the () operator should look like: void operator()(std::vector<Buffer *> &inputData, std::vector<Buffer *> &outputData) const;

When threaded is true, your function (or functor's () operator) must be thread safe. Please document your function appropriately if it is thread safe.

Parameters

functor	The processing function or functor which does your desired calculations.
threaded	True if multi-threading is supported, false otherwise. Sequential calling of the functor is guaranteed if this is false.

References Isis::Process::InputCubes, Isis::Process::OutputCubes, and Wraps().

Referenced by Isis::ProcessBySample::ProcessCubes(), Isis::ProcessByTile::ProcessCubes(), Isis::ProcessBySpectra::ProcessCubes(), and Isis::ProcessByLine::ProcessCubes().

◆ Progress()

Isis::Progress* Isis::Process::Progress ( )

inlineinherited

This method returns a pointer to a Progress object.

Returns: Progress*

References Isis::Process::p_progress.

Referenced by Isis::Equalization::applyCorrection(), Isis::Equalization::calculateBandStatistics(), Isis::HiEqualization::calculateStatistics(), Isis::ProcessMapMosaic::RingsSetOutputCube(), Isis::ProcessMapMosaic::SetOutputCube(), and Isis::SpectralDefinition2D::SpectralDefinition2D().

◆ PropagateHistory()

void Isis::Process::PropagateHistory ( const bool prop )

inherited

This method allows the programmer to propagate history to the output cube (default is true)

Parameters

prop	Flag indicating if history is to be propagated to output cubes.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagateLabels() [1/2]

void Isis::Process::PropagateLabels ( const bool prop )

inherited

This method allows the programmer to turn on/off the propagation of labels from the 1st input cube to any of the output cubes.

By default, propagation occurs automatically in the Process class when a call to either of the SetOutputCube methods is invoked. If the program * requires no propagation then utilize this method. This method can be invoked between successive calls of SetOutputCube so that some cube will have labels propagated while others will not.

Parameters

prop	Flag indicating if labels are be propagated to output cubes.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagateLabels() [2/2]

void Isis::Process::PropagateLabels ( const QString & cube )

inherited

This method allows the programmer to propagate labels from a specific secondary cube.

Parameters

cube	IString containing the name of the cube containing the labels to propagate.

References Isis::PvlObject::addGroup(), Isis::PvlObject::addObject(), Isis::PvlObject::findObject(), Isis::PvlObject::group(), Isis::PvlObject::groups(), and Isis::PvlObject::hasObject().

◆ PropagateOriginalLabel()

void Isis::Process::PropagateOriginalLabel ( const bool prop )

inherited

This method allows the programmer to propagate original labels to the output cube (default is true)

Parameters

prop	Flag indicating if original labels is to be propagated to output cubes.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagatePolygons()

void Isis::Process::PropagatePolygons ( const bool prop )

inherited

This method allows the programmer to propagate input blobs to the output cube (default is true)

Parameters

prop	Flag indicating if input blobs are to be propagated to output cubes.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagateTables() [1/2]

void Isis::Process::PropagateTables ( const bool prop )

inherited

This method allows the programmer to propagate input tables to the output cube (default is true)

Parameters

prop	Flag indicating if input tables are to be propagated to output cubes.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagateTables() [2/2]

void Isis::Process::PropagateTables	(	const QString &	fromName,
		const QList< QString > &	tableNames = `QList<QString>()`
	)

inherited

Propagate the tables from the cube with the given filename to the output cube.

This is done at the time this method is called, not during normal processing. The names of the tables to propagate can be provided through the second paramter, by specifing a list of table names. Not providing any list (or providing an empty list) will propagate all tables.

Parameters

fromName	QString of the name of the cube containing the tables to propagate.
tableNames	List of QStrings of the names of the tables to propagate; default is empty, which indicates that all tables will be propagated.

References Isis::Cube::label(), Isis::PvlObject::object(), Isis::PvlObject::objects(), Isis::Cube::open(), and Isis::Cube::read().

◆ SetBricks()

void Isis::ProcessByBrick::SetBricks ( IOCubes cn )

virtual

Reimplemented in Isis::ProcessByLine.

◆ SetBrickSize()

void Isis::ProcessByBrick::SetBrickSize	(	int	ns,
		int	nl,
		int	nb
	)

Sets the input and output bricks sizes to the given number of samples, lines, and bands.

Parameters

ns	Number of samples
nl	Number of lines
nb	Number of bands

◆ SetInputBrickSize() [1/2]

void Isis::ProcessByBrick::SetInputBrickSize	(	int	ns,
		int	nl,
		int	nb
	)

Sets the size of all input bricks.

Parameters

ns	Number of samples
nl	Number of lines
nb	Number of bands

◆ SetInputBrickSize() [2/2]

void Isis::ProcessByBrick::SetInputBrickSize	(	int	ns,
		int	nl,
		int	nb,
		int	cube
	)

Sets the brick size of the specified cube.

Parameters

ns	Number of samples
nl	Number of lines
nb	Number of bands
cube	The index of the cube

References _FILEINFO_.

◆ SetInputCube() [1/6]

Isis::Cube * Isis::Process::SetInputCube

Opens an input cube specified by the user and verifies requirements are met.

Returns: Cube*

Parameters

parameter User parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM".

requirements Use to specify requirements for the input file. The following are requirments are checked against 1) ic_base::SizeMatch checks to make sure the input cube has the same bands, samples, and lines as the first input cube open using this method, 2) ic_base::SpatialMatch checks to make sure the input cube has the same samples and lines as the first input cube, 3) ic_base::Georeferenced checks to make sure latitude/longitudes can be obtained from the input cube, 4) ic_base::FullyGeoreferenced checks to make sure latitude/longitude, phase/incidence/emission, and other geometric parameters can be obtained from the input cube, 5) ic_base::OneBand checks to make sure the input cube has exactly one band. Note, that these requirements can be logically or'ed. For example, ic_base::SpatialMatch | ic_base::georeferenced. Defaults to 0

Exceptions

Isis::iException::Message

◆ SetInputCube() [2/6]

Isis::Cube * Isis::Process::SetInputCube

Opens an input cube specified by the programmer and verifies requirements are met.

Parameters

fname	Programmer specified work file. For example, "myfile.cub".
att	The cube attributes to use when opening the input cube.
requirements	Same as requirements on SetInputCube. See that method for more details. Defaults to 0

Returns: Cube*

Exceptions

Isis::iException::Message

◆ SetInputCube() [3/6]

void Isis::Process::SetInputCube

Set the InputCube vector to an opened Cube which was dynamically allocated.

This is used if there already exists a valid opened cube

Author: Sharmila Prasad (5/7/2011)

Parameters

inCube - Pointer to input Cube

◆ SetInputCube() [4/6]

Cube * Isis::ProcessByBrick::SetInputCube	(	const QString &	parameter,
		int	requirements = `0`
	)

virtual

Opens an input cube specified by the user and verifies requirements are met.

This method is overloaded and adds the requirements of ISIS::SpatialMatch which requires all input cubes to have the same dimensions or be exactly be exactly one. For more information see Process::SetInputCube

Returns: Cube*

Parameters

parameter	User parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM".
requirements	See Process::SetInputCube for more information. Defaults to 0

Exceptions

iException::Message

Reimplemented from Isis::Process.

Reimplemented in Isis::ProcessByLine, Isis::ProcessBySpectra, and Isis::ProcessBySample.

References Isis::AllMatchOrOne.

◆ SetInputCube() [5/6]

Cube * Isis::ProcessByBrick::SetInputCube	(	const QString &	file,
		const CubeAttributeInput &	att,
		int	requirements = `0`
	)

virtual

Opens an input cube specified by the user, sets the attributes, and verifies requirements are met.

This method is overloaded and adds the requirements of ISIS::SpatialMatch which requires all input cubes to have the same dimensions or be exactly be exactly one. For more information see Process::SetInputCube

Returns: Cube*

Parameters

file	User parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM".
att	See Process::SetInputCube for more information.
requirements	See Process::SetInputCube for more information. Defaults to 0

Exceptions

iException::Message

Reimplemented from Isis::Process.

References Isis::AllMatchOrOne.

◆ SetInputCube() [6/6]

void Isis::Process::SetInputCube ( Isis::Cube * inCube )

virtualinherited

Set the InputCube vector to an opened Cube which was dynamically allocated.

This is used if there already exists a valid opened cube

Author: Sharmila Prasad (5/7/2011)

Parameters

inCube - Pointer to input Cube

Reimplemented in Isis::ProcessByLine.

References _FILEINFO_, and Isis::Cube::isOpen().

◆ SetOutputBrickSize() [1/2]

void Isis::ProcessByBrick::SetOutputBrickSize	(	int	ns,
		int	nl,
		int	nb
	)

Sets the size of all output bricks.

Parameters

ns	Number of samples
nl	Number of lines
nb	Number of bands

◆ SetOutputBrickSize() [2/2]

void Isis::ProcessByBrick::SetOutputBrickSize	(	int	ns,
		int	nl,
		int	nb,
		int	cube
	)

Sets the brick size of the specified output cube.

Parameters

ns	Number of samples
nl	Number of lines
nb	Number of bands
cube	The index of the cube

References _FILEINFO_.

◆ SetOutputCube() [1/4]

Isis::Cube * Isis::ProcessByBrick::SetOutputCube	(	const QString &	fname,
		const CubeAttributeOutput &	att
	)

virtual

Create the output file.

This method assumes that the output cube size matches the input cube size. Therefore, SetInputCube() must be called before this method.

Parameters

parameter	The output file name.
att	An output cube attribute to define the characteristics of the output cube.

Returns: Isis::Cube Output cube.

Exceptions

Isis::iException::Message "File is not in a supported organization."

References Isis::Cube::lineCount().

Referenced by Isis::Equalization::applyCorrection(), Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ SetOutputCube() [2/4]

Isis::Cube * Isis::Process::SetOutputCube ( const QString & parameter )

virtualinherited

Allocates a user-specified output cube whose size matches the first input cube.

Returns: Cube*

Parameters

parameter User specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType.

Exceptions

Isis::iException::Message

Reimplemented in Isis::ProcessMosaic, Isis::ProcessImport, and Isis::ProcessMapMosaic.

References _FILEINFO_.

Referenced by Isis::ProcessImport::SetOutputCube().

◆ SetOutputCube() [3/4]

Isis::Cube * Isis::Process::SetOutputCube	(	const QString &	parameter,
		const int	ns,
		const int	nl,
		const int	nb = `1`
	)

virtualinherited

Allocates a user specified output cube whose size is specified by the programmer.

Returns: Cube*

Parameters

parameter	User specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType.
ns	Number of samples to allocate
nl	Number of lines to allocate
nb	Number of bands to allocate

Exceptions

Isis::iException::Message

References _FILEINFO_.

◆ SetOutputCube() [4/4]

Isis::Cube * Isis::Process::SetOutputCube	(	const QString &	fname,
		const Isis::CubeAttributeOutput &	att,
		const int	ns,
		const int	nl,
		const int	nb = `1`
	)

virtualinherited

Allocates a output cube whose name and size is specified by the programmer.

Returns: Cube*

Parameters

fname	Name of the output cube to allocate
att	The cube attributes to use when creating the output cube.
ns	Number of samples to allocate
nl	Number of lines to allocate
nb	Number of bands to allocate

Exceptions

Isis::iException::Message

◆ SetOutputRequirements()

void Isis::ProcessByBrick::SetOutputRequirements ( int outputRequirements )

◆ SetProcessingDirection()

void Isis::ProcessByBrick::SetProcessingDirection ( ProcessingDirection direction )

Set the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst).

The default is to process all lines of a band first.

Parameters

direction The new enumerated processing direction

Referenced by Isis::ImageImporter::import(), and Isis::SpectralDefinition2D::SpectralDefinition2D().

◆ SetWrap()

void Isis::ProcessByBrick::SetWrap ( bool wrap )

This wrapping option only applys when there are two or more input cubes.

If wrapping is enabled and the second cube is smaller than the first The brick will be wrapped back to the beginning of the second cube once brick movement reaches the end of the cube. For example, if the brick shape was a single line and the second cube only had one line then function passed into StartProcess will receive the same contents in the 2nd input buffer every time.

Parameters

wrap	Specifies whether or not to wrap

Referenced by Isis::ProcessByLine::ProcessByLine(), and Isis::ProcessBySample::ProcessBySample().

◆ StartProcess() [1/6]

void Isis::ProcessByBrick::StartProcess ( void functBuffer &in )

virtual

Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube.

This method requires that exactly one input cube be loaded. No output cubes are produced.

Deprecated:: Please use ProcessCubeInPlace, ProcessCube, or ProcessCubes

Parameters

funct (Buffer &in) Receive an nxm brick in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.

Exceptions

iException::Programmer

Reimplemented in Isis::ProcessByTile.

References Isis::BufferManager::begin(), Isis::Brick::Bricks(), Isis::BufferManager::end(), Isis::Cube::isReadWrite(), Isis::Cube::read(), and Isis::Cube::write().

◆ StartProcess() [2/6]

void Isis::ProcessByBrick::StartProcess ( std::function< void(Buffer &in)> funct )

virtual

Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube.

This method requires that exactly one input cube be loaded. No output cubes are produced.

Deprecated:: Please use ProcessCubeInPlace, ProcessCube, or ProcessCubes

Parameters

funct (Buffer &in) Receive an nxm brick in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.

Exceptions

iException::Programmer

References Isis::BufferManager::begin(), Isis::Brick::Bricks(), Isis::BufferManager::end(), Isis::Cube::isReadWrite(), Isis::Cube::read(), and Isis::Cube::write().

◆ StartProcess() [3/6]

void Isis::ProcessByBrick::StartProcess ( std::function< void(Buffer &in, Buffer &out)> funct )

virtual

Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube.

This method requires that exactly one input cube and one output cube be loaded using the SetInputCube and SetOutputCube methods.

Deprecated:: Please use ProcessCubeInPlace, ProcessCube, or ProcessCubes

Parameters

funct (Buffer &in, Buffer &out) Receive an nxm brick in the input buffer and output the an nxm brick. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.

Exceptions

iException::Programmer

References Isis::BufferManager::begin().

◆ StartProcess() [4/6]

void Isis::ProcessByBrick::StartProcess ( void functBuffer &in, Buffer &out )

virtual

Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube.

This method requires that exactly one input cube and one output cube be loaded using the SetInputCube and SetOutputCube methods.

Deprecated:: Please use ProcessCubeInPlace, ProcessCube, or ProcessCubes

Parameters

funct (Buffer &in, Buffer &out) Receive an nxm brick in the input buffer and output the an nxm brick. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.

Exceptions

iException::Programmer

Reimplemented in Isis::ProcessByTile.

References Isis::BufferManager::begin().

◆ StartProcess() [5/6]

void Isis::ProcessByBrick::StartProcess ( void functstd::vector< Buffer * > &in, std::vector< Buffer * > &out )

virtual

Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube.

This method allows multiple input and output cubes.

Deprecated:: Please use ProcessCubeInPlace, ProcessCube, or ProcessCubes

Parameters

funct (vector<Buffer *> &in, vector<Buffer *> &out) Receive an nxm brick in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.

Exceptions

iException::Programmer

Reimplemented in Isis::ProcessByTile.

◆ StartProcess() [6/6]

virtual void Isis::Process::StartProcess ( void funct() )

inlinevirtualinherited

In the base class, this method will invoked a user-specified function exactly one time.

In derived classes such as ProcessByLine, the StartProcess will invoke a user-specified function for every line in a cube.

Parameters

funct() Name of your processing function

◆ VerifyCubes()

void Isis::ProcessByBrick::VerifyCubes ( IOCubes cn )

Verifies the dimensions of the input/output cubes.

Parameters

cn	An IOCubes enumeration for one of three possible Input/Output situations: InPlace: The input cube is the output cube InputOutput: One input cube and one output cube InputOutputList: A vector of input and output cubes. The input vector is not necessarily the same length as the output vector

Exceptions

iException::Message

References _FILEINFO_, and Isis::SpatialMatch.

Referenced by Isis::ProcessBySample::ProcessCube(), Isis::ProcessByTile::ProcessCube(), Isis::ProcessBySpectra::ProcessCube(), Isis::ProcessByLine::ProcessCube(), Isis::ProcessBySample::ProcessCubeInPlace(), Isis::ProcessByTile::ProcessCubeInPlace(), Isis::ProcessBySpectra::ProcessCubeInPlace(), Isis::ProcessByLine::ProcessCubeInPlace(), Isis::ProcessBySample::ProcessCubes(), Isis::ProcessByTile::ProcessCubes(), Isis::ProcessBySpectra::ProcessCubes(), and Isis::ProcessByLine::ProcessCubes().

◆ Wraps()

bool Isis::ProcessByBrick::Wraps ( )

Returns true if the wrapping option is enabled.

See also: SetWrap()

Returns: The value of the wrapping option

Referenced by ProcessCubes().

◆ WriteHistory()

void Isis::Process::WriteHistory ( Cube & cube )

inherited

Writes out the History blob to the cube.

References Isis::History::AddEntry(), Isis::iApp, Isis::PvlContainer::isNamed(), Isis::PvlObject::object(), Isis::PvlObject::objects(), and Isis::Cube::write().

Referenced by Isis::ImageImporter::import().

Member Data Documentation

◆ InputCubes

std::vector<Isis::Cube *> Isis::Process::InputCubes

protectedinherited

A vector of pointers to opened Cube objects.

The pointers are established in the SetInputCube/SetInputWorkCube methods.

Referenced by Isis::ProcessExport::CreateWorldFile(), Isis::ProcessExport::GetBuffersBIL(), Isis::ProcessExport::GetBuffersBIP(), Isis::ProcessExport::GetBuffersBSQ(), ProcessCube(), Isis::ProcessExport::ProcessCubes(), ProcessCubes(), Isis::ProcessExport::SetInputRange(), Isis::ProcessByQuickFilter::StartProcess(), and Isis::ProcessExport::StartProcess().

◆ m_ownedCubes

QSet<Isis::Cube *>* Isis::Process::m_ownedCubes

protectedinherited

A list of cubes owned by this instant.

These cubes will be deleted on finalization. Process will not take ownership of cubes allocated outside of Process. It is the caller's responsibility to delete such cubes.

◆ OutputCubes

std::vector<Isis::Cube *> Isis::Process::OutputCubes

protectedinherited

A vector of pointers to allocated Cube objects.

The pointers are established in the SetOutputCube method.

Referenced by Isis::ProcessImport::ProcessBil(), Isis::ProcessImport::ProcessBip(), Isis::ProcessImport::ProcessBsq(), ProcessCube(), ProcessCubes(), Isis::ProcessImport::ProcessJp2(), and Isis::ProcessByQuickFilter::StartProcess().

◆ p_bandStats

std::vector< std::vector< Isis::Statistics * > > Isis::Process::p_bandStats

protectedinherited

Holds the calculated statistics for each band separately of every input cubei after the CalculateStatistics method is called.

Referenced by Isis::Process::BandStatistics().

◆ p_cubeStats

std::vector< Isis::Statistics * > Isis::Process::p_cubeStats

protectedinherited

Holds the calculated statistics for every band together of every input cubei after the CalculateStatistics method is called.

Referenced by Isis::Process::CubeStatistics().

◆ p_progress

Isis::Progress* Isis::Process::p_progress

protectedinherited

Pointer to a Progress object.

Referenced by Isis::ProcessImport::ProcessBil(), Isis::ProcessImport::ProcessBip(), Isis::ProcessImport::ProcessBsq(), Isis::ProcessExport::ProcessCubes(), Isis::ProcessExport::ProcessExport(), Isis::ProcessImport::ProcessImport(), Isis::ProcessImport::ProcessJp2(), Isis::Process::Progress(), Isis::ProcessByQuickFilter::StartProcess(), and Isis::ProcessExport::StartProcess().

◆ p_propagateHistory

bool Isis::Process::p_propagateHistory

protectedinherited

Flag indicating if history is to be propagated to output cubes.

◆ p_propagateLabels

bool Isis::Process::p_propagateLabels

protectedinherited

Flag indicating if labels are be propagated to output cubes.

◆ p_propagateOriginalLabel

bool Isis::Process::p_propagateOriginalLabel

protectedinherited

Flag indicating if original lable is to be propagated to output cubes.

◆ p_propagatePolygons

bool Isis::Process::p_propagatePolygons

protectedinherited

Flag indicating if blobs are be propagated to output cubes.

◆ p_propagateTables

bool Isis::Process::p_propagateTables

protectedinherited

Flag indicating if tables are be propagated to output cubes.

The documentation for this class was generated from the following files:

/usgs/pkgs/isis3.9.0_docs/ISIS3/isis/src/base/objs/ProcessByBrick/ProcessByBrick.h
/usgs/pkgs/isis3.9.0_docs/ISIS3/isis/src/base/objs/ProcessByBrick/ProcessByBrick.cpp

Public Types

Public Member Functions

Protected Attributes

Detailed Description

Member Enumeration Documentation

◆ IOCubes

◆ ProcessingDirection

Constructor & Destructor Documentation

◆ ProcessByBrick()

◆ ~ProcessByBrick()

Member Function Documentation

◆ AddInputCube()

◆ AddOutputCube()

◆ BandStatistics()

◆ CalculateStatistics()

◆ ClearCubes()

◆ ClearInputCubes()

◆ ClearOutputCubes()

◆ CubeStatistics()

◆ EndProcess()

◆ Finalize()

◆ GetProcessingDirection()

◆ MissionData()

◆ ProcessCube()

◆ ProcessCubeInPlace()

◆ ProcessCubes()

◆ Progress()

◆ PropagateHistory()

◆ PropagateLabels() [1/2]

◆ PropagateLabels() [2/2]

◆ PropagateOriginalLabel()

◆ PropagatePolygons()

◆ PropagateTables() [1/2]

◆ PropagateTables() [2/2]

◆ SetBricks()

◆ SetBrickSize()

◆ SetInputBrickSize() [1/2]

◆ SetInputBrickSize() [2/2]

◆ SetInputCube() [1/6]

◆ SetInputCube() [2/6]

◆ SetInputCube() [3/6]

◆ SetInputCube() [4/6]

◆ SetInputCube() [5/6]

◆ SetInputCube() [6/6]

◆ SetOutputBrickSize() [1/2]

◆ SetOutputBrickSize() [2/2]

◆ SetOutputCube() [1/4]

◆ SetOutputCube() [2/4]

◆ SetOutputCube() [3/4]

◆ SetOutputCube() [4/4]

◆ SetOutputRequirements()

◆ SetProcessingDirection()

◆ SetWrap()

◆ StartProcess() [1/6]

◆ StartProcess() [2/6]

◆ StartProcess() [3/6]

◆ StartProcess() [4/6]

◆ StartProcess() [5/6]

◆ StartProcess() [6/6]

◆ VerifyCubes()

◆ Wraps()

◆ WriteHistory()

Member Data Documentation

◆ InputCubes

◆ m_ownedCubes

◆ OutputCubes

◆ p_bandStats

◆ p_cubeStats

◆ p_progress

◆ p_propagateHistory

◆ p_propagateLabels

◆ p_propagateOriginalLabel

◆ p_propagatePolygons

◆ p_propagateTables