Isis Developer Reference
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Container of a cube histogram. More...
#include <Histogram.h>
Public Member Functions | |
Histogram ()=default | |
Histogram (double minimum, double maximum, int bins=1024) | |
Constructs a histogram object. | |
Histogram (Cube &cube, int statsBand, Progress *progress=NULL, double startSample=1.0, double startLine=1.0, double endSample=Null, double endLine=Null, int bins=0, bool addCubeData=false) | |
Histogram (ControlNet &net, double(ControlMeasure::*statFunc)() const, int bins) | |
Constructs a histogram from a control netowrk. | |
Histogram (ControlNet &net, double(ControlMeasure::*statFunc)() const, double binWidth) | |
Constructs a histogram from a control netowrk. | |
~Histogram () | |
Destructs a histogram object. | |
void | SetBins (const int bins) |
Change the number of bins in the histogram and reset counters. | |
void | Reset () |
Resets histogram counters to zero. | |
virtual void | AddData (const double *data, const unsigned int count) |
Add an array of doubles to the histogram counters. | |
virtual void | AddData (const double data) |
Add a single double data to the histogram. | |
virtual void | RemoveData (const double *data, const unsigned int count) |
Remove an array of doubles from the histogram counters. | |
double | Median () const |
Returns the median. | |
double | Mode () const |
Returns the mode. | |
double | Percent (const double percent) const |
Computes and returns the value at X percent of the histogram. | |
double | Skew () const |
Computes and returns the skew. | |
BigInt | BinCount (const int index) const |
Returns the count at a bin position in the histogram. | |
virtual void | BinRange (const int index, double &low, double &high) const |
Returns the left edge and right edge values of a bin. | |
double | BinMiddle (const int index) const |
Returns the value represented by a bin. | |
double | BinSize () const |
Returns the size of an individual bin. | |
int | Bins () const |
Returns the number of bins in the histogram. | |
BigInt | MaxBinCount () const |
Returns the highest bin count. | |
double | BinRangeStart () const |
double | BinRangeEnd () const |
void | SetValidRange (const double minimum=Isis::ValidMinimum, const double maximum=Isis::ValidMaximum) |
Changes the range of the bins. | |
void | readStatistics (QXmlStreamReader *xmlReader) |
void | RemoveData (const double data) |
double | ValidMinimum () const |
double | ValidMaximum () const |
bool | InRange (const double value) |
bool | AboveRange (const double value) |
bool | BelowRange (const double value) |
double | Average () const |
Computes and returns the average. | |
double | StandardDeviation () const |
Computes and returns the standard deviation. | |
double | Variance () const |
Computes and returns the variance. | |
double | Sum () const |
Returns the sum of all the data. | |
double | SumSquare () const |
Returns the sum of all the squared data. | |
double | Rms () const |
Computes and returns the rms. | |
double | Minimum () const |
Returns the absolute minimum double found in all data passed through the AddData method. | |
double | Maximum () const |
Returns the absolute maximum double found in all data passed through the AddData method. | |
double | ChebyshevMinimum (const double percent=99.5) const |
This method returns a minimum such that X percent of the data will fall with K standard deviations of the average (Chebyshev's Theorem). | |
double | ChebyshevMaximum (const double percent=99.5) const |
This method returns a maximum such that X percent of the data will fall with K standard deviations of the average (Chebyshev's Theorem). | |
double | BestMinimum (const double percent=99.5) const |
This method returns the better of the absolute minimum or the Chebyshev minimum. | |
double | BestMaximum (const double percent=99.5) const |
This method returns the better of the absolute maximum or the Chebyshev maximum. | |
double | ZScore (const double value) const |
This method returns the better of the z-score of the given value. | |
BigInt | TotalPixels () const |
Returns the total number of pixels processed (valid and invalid). | |
BigInt | ValidPixels () const |
Returns the total number of valid pixels processed. | |
BigInt | OverRangePixels () const |
Returns the total number of pixels over the valid range encountered. | |
BigInt | UnderRangePixels () const |
Returns the total number of pixels under the valid range encountered. | |
BigInt | NullPixels () const |
Returns the total number of NULL pixels encountered. | |
BigInt | LisPixels () const |
Returns the total number of low instrument saturation (LIS) pixels encountered. | |
BigInt | LrsPixels () const |
Returns the total number of low representation saturation (LRS) pixels encountered. | |
BigInt | HisPixels () const |
Returns the total number of high instrument saturation (HIS) pixels encountered. | |
BigInt | HrsPixels () const |
Returns the total number of high representation saturation (HRS) pixels encountered. | |
BigInt | OutOfRangePixels () const |
Returns the total number of pixels outside of the valid range encountered. | |
bool | RemovedData () const |
PvlGroup | toPvl (QString name="Statistics") const |
Serialize statistics as a pvl group. | |
void | save (QXmlStreamWriter &stream, const Project *project) const |
QDataStream & | write (QDataStream &stream) const |
Order saved must match the offsets in the static compoundH5DataType() method. | |
QDataStream & | read (QDataStream &stream) |
Protected Attributes | |
std::vector< BigInt > | p_bins |
The array of counts. | |
Container of a cube histogram.
This class is used to accumulate a histogram on double arrays. In particular, it is highly useful for obtaining a histogram on cube data. Parameters which can be computed are the 1) median, 2) mode, and 3) skew. The histogram consists of a fixed set of distinct bins. When an object is created the programmer must provide a minimum and maximum which defines how data is further placed in the bins. The minimum is mapped to the left edge of the first bin [0] and the maximum is mapped to the right edge of the last bin [Bins()-1]. There are a set of methods which return bin information such as 1) count, 2) size, 3) middle value, 4) range, and 5) maximum bin count.
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default |
Isis::Histogram::Histogram | ( | double | minimum, |
double | maximum, | ||
int | nbins = 1024 ) |
Constructs a histogram object.
Only data between the minimum and maximum will be binned, and the bin range will be from the minimum to the maximum.
minimum | Minimum value for binning the data into the histogram. |
maximum | Maximum value for binning the data into the histogram. |
nbins | The number of bins to use |
References SetBins(), and SetValidRange().
Isis::Histogram::Histogram | ( | Cube & | cube, |
int | statsBand, | ||
Progress * | progress = NULL, | ||
double | startSample = 1.0, | ||
double | startLine = 1.0, | ||
double | endSample = Null, | ||
double | endLine = Null, | ||
int | bins = 0, | ||
bool | addCubeData = false ) |
Isis::Histogram::Histogram | ( | ControlNet & | net, |
double(ControlMeasure::*)() const | statFunc, | ||
int | bins ) |
Constructs a histogram from a control netowrk.
net | Reference to a ControlNetwork used to access all the measures. |
statFunc | Pointer to a ControlMeasure acessor, the returns of this function call will be used to build up the network. |
bins | The number of bins to divide the histogram into. |
The | number of Histogram Bins must be greater than 0. |
References _FILEINFO_, Isis::IException::Programmer, and SetBins().
Isis::Histogram::Histogram | ( | ControlNet & | net, |
double(ControlMeasure::*)() const | statFunc, | ||
double | binWidth ) |
Constructs a histogram from a control netowrk.
Net | Reference to a ControlNetwork used to access all the measures. |
statFunc | Pointer to a ControlMeasure acessor, the returns of this. function call will be used to build up the network. |
binWidth | The width of histogram bins. |
The | width of Histogram Bins must be greater than 0. |
References _FILEINFO_, Isis::IException::Programmer, SetBins(), Isis::Statistics::ValidMaximum(), and Isis::Statistics::ValidMinimum().
Isis::Histogram::~Histogram | ( | ) |
Destructs a histogram object.
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inherited |
Referenced by Isis::Statistics::AddData(), Isis::Statistics::InRange(), and Isis::Statistics::RemoveData().
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Add an array of doubles to the histogram counters.
This method can be invoked multiple times. For example, once for each line in a cube, before obtaining statistics and histogram information.
data | Pointer to array of double to add. |
count | Number of doubles to process. |
Reimplemented in Isis::ImageHistogram.
References Isis::Statistics::AddData(), BinRangeEnd(), BinRangeStart(), Isis::Statistics::InRange(), Isis::IsValidPixel(), and p_bins.
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Add a single double data to the histogram.
Of course this can be invoke multiple times. e.g. once for each residual in a network for instance.
data | a single observation to be added to the histogram |
Reimplemented in Isis::ImageHistogram.
References Isis::Statistics::AddData(), BinRangeEnd(), BinRangeStart(), Isis::Statistics::InRange(), Isis::IsValidPixel(), and p_bins.
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inherited |
Computes and returns the average.
If there are no valid pixels, then NULL8 is returned.
References Isis::NULL8.
Referenced by Isis::OverlapNormalization::AddOverlap(), Isis::ControlNet::AverageResidual(), Isis::Statistics::ChebyshevMaximum(), Isis::Statistics::ChebyshevMinimum(), Isis::MultivariateStatistics::Covariance(), Isis::ControlNetStatistics::GenerateControlNetStats(), Isis::VisualDisplay::paintPixmap(), Skew(), Isis::CameraStatistics::toPvl(), Isis::Statistics::toPvl(), and Isis::Statistics::ZScore().
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inherited |
Referenced by Isis::Statistics::AddData(), Isis::Statistics::InRange(), and Isis::Statistics::RemoveData().
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This method returns the better of the absolute maximum or the Chebyshev maximum.
The better value is considered the value closest to the mean.
percent | The probability that the maximum is within K standard deviations of the mean (Used to compute the Chebyshev maximum). Default value = 99.5. |
References Isis::Statistics::ChebyshevMaximum(), Isis::Statistics::Maximum(), Isis::Statistics::Minimum(), and Isis::NULL8.
Referenced by Isis::VisualDisplay::setPixelData(), and Isis::LinearStretchType::setStretch().
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inherited |
This method returns the better of the absolute minimum or the Chebyshev minimum.
The better value is considered the value closest to the mean.
percent | The probability that the minimum is within K standard deviations of the mean (Used to compute the Chebyshev minimum). Default value = 99.5. |
References Isis::Statistics::ChebyshevMinimum(), Isis::Statistics::Maximum(), Isis::Statistics::Minimum(), and Isis::NULL8.
Referenced by Isis::VisualDisplay::setPixelData(), and Isis::LinearStretchType::setStretch().
BigInt Isis::Histogram::BinCount | ( | const int | index | ) | const |
Returns the count at a bin position in the histogram.
index | Index of the desired bin 0 to Bins()-1. |
References _FILEINFO_, Isis::Message::ArraySubscriptNotInRange(), p_bins, and Isis::IException::Programmer.
double Isis::Histogram::BinMiddle | ( | const int | index | ) | const |
Returns the value represented by a bin.
This is not the count, but the actual data value at the middle of the bin.
index | Index of the desired bin 0 to Bins()-1. |
References _FILEINFO_, Isis::Message::ArraySubscriptNotInRange(), BinRange(), p_bins, and Isis::IException::Programmer.
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Returns the left edge and right edge values of a bin.
That is the range of data the bin covers.
iException | The programmer has passed in an index outside of 0 to Bins()-1. |
index | Index of the desired bin 0 to Bins()-1. |
low | The value at the left edge of the requested bin. |
high | The value at the right edge of the requested bin. |
Reimplemented in Isis::ImageHistogram.
References _FILEINFO_, Isis::Message::ArraySubscriptNotInRange(), BinRangeEnd(), BinRangeStart(), p_bins, and Isis::IException::Programmer.
Referenced by BinMiddle(), and BinSize().
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int Isis::Histogram::Bins | ( | ) | const |
Returns the number of bins in the histogram.
References p_bins.
Referenced by Isis::GaussianStretch::GaussianStretch().
double Isis::Histogram::BinSize | ( | ) | const |
Returns the size of an individual bin.
Essentially, the difference of the high and low edge values (BinRange) of a bin. This value is constant for all bins.
References BinRange().
Referenced by Isis::BinaryStretchType::setStretch(), Isis::LinearStretchType::setStretch(), and Isis::SawtoothStretchType::setStretch().
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inherited |
This method returns a maximum such that X percent of the data will fall with K standard deviations of the average (Chebyshev's Theorem).
It can be used to obtain a minimum that does not include statistical outliers.
percent | The probability that the maximum is within K standard deviations of the mean. Default value = 99.5. |
Isis::IException::Message |
References _FILEINFO_, Isis::Statistics::Average(), Isis::NULL8, Isis::IException::Programmer, and Isis::Statistics::StandardDeviation().
Referenced by Isis::Statistics::BestMaximum().
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inherited |
This method returns a minimum such that X percent of the data will fall with K standard deviations of the average (Chebyshev's Theorem).
It can be used to obtain a minimum that does not include statistical outliers.
percent | The probability that the minimum is within K standard deviations of the mean. Default value = 99.5. |
Isis::IException::Message |
References _FILEINFO_, Isis::Statistics::Average(), Isis::NULL8, Isis::IException::Programmer, and Isis::Statistics::StandardDeviation().
Referenced by Isis::Statistics::BestMinimum().
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inherited |
Returns the total number of high instrument saturation (HIS) pixels encountered.
Referenced by Isis::Statistics::toPvl().
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inherited |
Returns the total number of high representation saturation (HRS) pixels encountered.
Referenced by Isis::Statistics::toPvl().
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inherited |
References Isis::Statistics::AboveRange(), and Isis::Statistics::BelowRange().
Referenced by AddData(), Isis::ImageHistogram::AddData(), AddData(), and Isis::ImageHistogram::AddData().
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Returns the total number of low instrument saturation (LIS) pixels encountered.
Referenced by Isis::Statistics::toPvl().
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Returns the total number of low representation saturation (LRS) pixels encountered.
Referenced by Isis::Statistics::toPvl().
BigInt Isis::Histogram::MaxBinCount | ( | ) | const |
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Returns the absolute maximum double found in all data passed through the AddData method.
If there are no valid pixels, then NULL8 is returned.
Isis::IException::Message | The data set is blank, so the maximum is invalid. |
References _FILEINFO_, Isis::NULL8, and Isis::IException::Programmer.
Referenced by Isis::Statistics::BestMaximum(), Isis::Statistics::BestMinimum(), Isis::QnetPointJigsawErrorFilter::filter(), Isis::QnetPointRegistrationErrorFilter::filter(), Isis::GaussianStretch::GaussianStretch(), Isis::ControlNetStatistics::GenerateControlNetStats(), Isis::VisualDisplay::paintPixmap(), Isis::SawtoothStretchType::SawtoothStretchType(), Isis::BinaryStretchType::setStretch(), Isis::CameraStatistics::toPvl(), Isis::Statistics::toPvl(), and Isis::Statistics::ZScore().
double Isis::Histogram::Median | ( | ) | const |
Returns the median.
References Percent().
Referenced by Isis::SawtoothStretchType::SawtoothStretchType(), Isis::ProcessExport::SetInputRange(), and Skew().
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Returns the absolute minimum double found in all data passed through the AddData method.
If there are no valid pixels, then NULL8 is returned.
Isis::IException::Message | The data set is blank, so the minimum is invalid. |
References _FILEINFO_, Isis::NULL8, and Isis::IException::Programmer.
Referenced by Isis::Statistics::BestMaximum(), Isis::Statistics::BestMinimum(), Isis::GaussianStretch::GaussianStretch(), Isis::ControlNetStatistics::GenerateControlNetStats(), Isis::VisualDisplay::paintPixmap(), Isis::SawtoothStretchType::SawtoothStretchType(), Isis::BinaryStretchType::setStretch(), Isis::CameraStatistics::toPvl(), and Isis::Statistics::toPvl().
double Isis::Histogram::Mode | ( | ) | const |
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Returns the total number of NULL pixels encountered.
Referenced by Isis::Statistics::toPvl().
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Returns the total number of pixels outside of the valid range encountered.
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Returns the total number of pixels over the valid range encountered.
Referenced by Isis::Statistics::toPvl().
double Isis::Histogram::Percent | ( | const double | percent | ) | const |
Computes and returns the value at X percent of the histogram.
For example, Percent(50.0) is equivalent to the computing the median. While Percent(0.5) and Percent(99.5) would obtain a minimum and maximum for the data that could be used for a good contrast stretch.
percent | X percent of the histogram to compute. |
References _FILEINFO_, BinMiddle(), Isis::NULL8, p_bins, Isis::IException::Programmer, and Isis::Statistics::ValidPixels().
Referenced by Isis::BinaryStretchType::BinaryStretchType(), Isis::GaussianStretch::GaussianStretch(), and Median().
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Referenced by Isis::operator>>().
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References Isis::toBigInt(), Isis::toBool(), Isis::toDouble(), Isis::ValidMaximum, and Isis::ValidMinimum.
Referenced by Isis::Statistics::Statistics().
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Remove an array of doubles from the histogram counters.
Note that this invalidates the absolute minimum and maximum. They will no longer be useable.
data | Pointer to array of doubles to remove. |
count | number of doubles to process. |
Reimplemented in Isis::ImageHistogram.
References BinRangeEnd(), BinRangeStart(), Isis::IsValidPixel(), p_bins, and Isis::Statistics::RemoveData().
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void Isis::Histogram::Reset | ( | ) |
Resets histogram counters to zero.
References p_bins, and Isis::Statistics::Reset().
Referenced by SetBins(), and SetValidRange().
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Computes and returns the rms.
If there are no valid pixels, then NULL8 is returned.
References Isis::NULL8.
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References Isis::toString().
void Isis::Histogram::SetBins | ( | const int | bins | ) |
Change the number of bins in the histogram and reset counters.
References p_bins, and Reset().
Referenced by Histogram(), Histogram(), and Histogram().
void Isis::Histogram::SetValidRange | ( | const double | minimum = Isis::ValidMinimum, |
const double | maximum = Isis::ValidMaximum ) |
Changes the range of the bins.
This function also sets the range of the parent statistics class and resets the stats/histogram counters. So binRange = setValidRange. Should only be called once, prior to Adding data to the histogram.
binStart | The start of the bin range |
binEnd | The end of the bin range |
References _FILEINFO_, Isis::IException::Programmer, Reset(), and Isis::Statistics::SetValidRange().
Referenced by Histogram().
double Isis::Histogram::Skew | ( | ) | const |
Computes and returns the skew.
If there are no valid pixels then NULL8 is returned. Recognize that because of the binning which occurs, in order to generate the histogram, the skew may not be precise but will be very close.
References Isis::Statistics::Average(), Median(), Isis::NULL8, Isis::Statistics::StandardDeviation(), and Isis::Statistics::ValidPixels().
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Computes and returns the standard deviation.
If there are no valid pixels, then NULL8 is returned.
References Isis::NULL8, and Isis::Statistics::Variance().
Referenced by Isis::Statistics::ChebyshevMaximum(), Isis::Statistics::ChebyshevMinimum(), Isis::MultivariateStatistics::Correlation(), Isis::VisualDisplay::paintPixmap(), Skew(), Isis::CameraStatistics::toPvl(), Isis::Statistics::toPvl(), and Isis::Statistics::ZScore().
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Returns the sum of all the data.
Referenced by Isis::MultivariateStatistics::Covariance(), Isis::MultivariateStatistics::LinearRegression(), and Isis::Statistics::toPvl().
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Returns the sum of all the squared data.
Referenced by Isis::MultivariateStatistics::LinearRegression(), and Isis::Statistics::toPvl().
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Serialize statistics as a pvl group.
QString | name (Default value is "Statistics") - Name of the statistics group |
References Isis::Statistics::Average(), Isis::Statistics::HisPixels(), Isis::Statistics::HrsPixels(), Isis::Statistics::LisPixels(), Isis::Statistics::LrsPixels(), Isis::Statistics::Maximum(), Isis::Statistics::Minimum(), Isis::Statistics::NullPixels(), Isis::Statistics::OverRangePixels(), Isis::Statistics::StandardDeviation(), Isis::Statistics::Sum(), Isis::Statistics::SumSquare(), Isis::toString(), Isis::Statistics::TotalPixels(), Isis::Statistics::UnderRangePixels(), Isis::Statistics::ValidMaximum(), Isis::Statistics::ValidMinimum(), Isis::Statistics::ValidPixels(), and Isis::Statistics::Variance().
Referenced by Isis::MultivariateStatistics::toPvl().
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Returns the total number of pixels processed (valid and invalid).
Referenced by Isis::VisualDisplay::paintPixmap(), and Isis::Statistics::toPvl().
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Returns the total number of pixels under the valid range encountered.
Referenced by Isis::Statistics::toPvl().
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Referenced by Histogram(), and Isis::Statistics::toPvl().
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Referenced by Histogram(), and Isis::Statistics::toPvl().
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Returns the total number of valid pixels processed.
Only valid pixels are utilized when computing the average, standard deviation, variance, minimum and maximum.
Referenced by Isis::OverlapNormalization::AddOverlap(), Percent(), Skew(), and Isis::Statistics::toPvl().
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Computes and returns the variance.
If there are no valid pixels, then NULL8 is returned.
References Isis::NULL8.
Referenced by Isis::Statistics::StandardDeviation(), and Isis::Statistics::toPvl().
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Order saved must match the offsets in the static compoundH5DataType() method.
Referenced by Isis::operator<<().
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This method returns the better of the z-score of the given value.
The z-score is the number of standard deviations the value lies above or below the average.
value | The value to calculate the z-score of. |
References _FILEINFO_, Isis::Statistics::Average(), Isis::Statistics::Maximum(), Isis::IException::Programmer, Isis::Statistics::StandardDeviation(), and Isis::toString().
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protected |
The array of counts.
Referenced by AddData(), Isis::ImageHistogram::AddData(), AddData(), Isis::ImageHistogram::AddData(), BinCount(), BinMiddle(), BinRange(), Isis::ImageHistogram::BinRange(), Bins(), MaxBinCount(), Mode(), Percent(), RemoveData(), Isis::ImageHistogram::RemoveData(), Reset(), and SetBins().