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Isis Developer Reference
Cube.h
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1#ifndef Cube_h
2#define Cube_h
7
8/* SPDX-License-Identifier: CC0-1.0 */
9
10#include <vector>
11
12// This is needed for the QVariant macro
13#include <QMetaType>
14#include <QList>
15#include <QMap>
16
17#include <nlohmann/json.hpp>
18
19#include "Endian.h"
20#include "PixelType.h"
21#include "PvlKeyword.h"
22
23class QFile;
24class QMutex;
25class QString;
26
27namespace Isis {
28 class Blob;
29 class Buffer;
30 class Camera;
33 class CubeStretch;
34 class FileName;
35 class ImageIoHandler;
36 class Projection;
37 class Pvl;
38 class PvlGroup;
39 class Statistics;
40 class Table;
41 class Histogram;
42 class History;
43 class OriginalLabel;
44 class OriginalXmlLabel;
45 class ImagePolygon;
46
47
168 class Cube {
169 public:
170 Cube();
171 Cube(const FileName &fileName, QString access = "r");
172
173 virtual ~Cube();
174
236
257
258 void fromIsd(const FileName &fileName, Pvl &label, nlohmann::json &isd, QString access);
259 void fromIsd(const FileName &fileName, FileName &labelFile, FileName &isdFile, QString access);
260
261 void fromLabel(const FileName &fileName, Pvl &label, QString access);
262
263 bool isOpen() const;
264 bool isProjected() const;
265 bool isReadOnly() const;
266 bool isReadWrite() const;
267 LabelAttachment labelsAttached() const;
268
269 void attachSpiceFromIsd(nlohmann::json Isd);
270 void attachLineScanTableFromIsd(nlohmann::json isd);
271
272 void close(bool remove = false);
273 Cube *copy(FileName newFile, const CubeAttributeOutput &newFileAttributes);
274 void create(const QString &cfile);
275 void create(const QString &cfile, const CubeAttributeOutput &att);
276 void createGdal(QString &dataFileName, QString &, char **papszOptions);
277 void checkAccess(QString access);
278 void open(const QString &cfile, QString access = "r");
279 void openCube(const QString &cubeFileName, QString access);
280 void openGdal(const QString &cubeFileName, QString access);
281 void reopen(QString access = "r");
282
283 void read(Blob &blob,
284 const std::vector<PvlKeyword> keywords = std::vector<PvlKeyword>()) const;
285 void read(Buffer &rbuf) const;
286 OriginalLabel readOriginalLabel(const QString &name="IsisCube") const;
287 CubeStretch readCubeStretch(QString name="CubeStretch",
288 const std::vector<PvlKeyword> keywords = std::vector<PvlKeyword>()) const;
290 History readHistory(const QString &name = "IsisCube") const;
292 Table readTable(const QString &name);
293 void write(Blob &blob, bool overwrite=true);
294 void write(const Table &table);
295 void write(const CubeStretch &cubeStretch);
296 void write(OriginalLabel &lab);
297 void write(const OriginalXmlLabel &lab);
298 void write(History &history, const QString &name = "IsisCube");
299 void write(const ImagePolygon &polygon);
300 void write(Buffer &wbuf);
301
302 void setBaseMultiplier(double base, double mult);
303 void setMinMax(double min, double max);
305 void setDimensions(int ns, int nl, int nb);
306 void setExternalDnData(FileName cubeFileWithDnData);
307 void setFormat(Format format);
308 void setLabelsAttached(LabelAttachment attached);
309 // void setLabelsExternal(bool external);
310 void setLabelSize(int labelBytes);
312 void setVirtualBands(const QList<QString> &vbands);
313 void setVirtualBands(const std::vector<QString> &vbands);
314
315 void relocateDnData(FileName dnDataFile);
316// static void relocateDnData(FileName externalLabelFile, FileName dnDataFile);
317
318 virtual int bandCount() const;
319 double base() const;
320 ByteOrder byteOrder() const;
321 Camera *camera();
323 virtual QString fileName() const;
324 Format format() const;
325 virtual Histogram *histogram(const int &band = 1,
326 QString msg = "Gathering histogram");
327 virtual Histogram *histogram(const int &band, const double &validMin,
328 const double &validMax,
329 QString msg = "Gathering histogram");
330 Pvl *label() const;
331 int labelSize(bool actual = false) const;
332 int lineCount() const;
333 double multiplier() const;
334 PixelType pixelType() const;
335 virtual int physicalBand(const int &virtualBand) const;
337 int sampleCount() const;
338 Statistics *statistics(const int &band = 1,
339 QString msg = "Gathering statistics");
340 Statistics *statistics(const int &band, const double &validMin,
341 const double &validMax,
342 QString msg = "Gathering statistics");
343
345 void clearIoCache();
346 bool deleteBlob(QString BlobName, QString BlobType);
347 void deleteGroup(const QString &group);
348 PvlGroup &group(const QString &group) const;
349 bool hasGroup(const QString &group) const;
350 bool hasTable(const QString &name);
351 bool hasBlob(const QString &name, const QString &type);
352 void putGroup(const PvlGroup &group);
353 void latLonRange(double &minLatitude, double &maxLatitude, double &minLongitude,
354 double &maxLongitude);
356
357 private:
358 void applyVirtualBandsToLabel();
359 void cleanUp(bool remove);
360
361 void construct();
362 QFile *dataFile() const;
363 GDALDataset *gdalDataset() const;
364
365 void initialize();
366 void initCoreFromLabel(const Pvl &label);
367 void initCoreFromGdal(const QString &labelFile);
368 void initLabelState(const Pvl &label);
369 void initLabelFromFile(FileName labelFileName, bool readWrite);
370 void openCheck();
371 Pvl realDataFileLabel() const;
372 void reformatOldIsisLabel(const QString &oldCube);
373 void writeLabels();
374
375 private:
384 QFile *m_labelFile;
385
391 QFile *m_dataFile;
392
396 GDALDataset *m_geodataSet = nullptr;
397
402 ImageIoHandler *m_ioHandler;
403
409 ByteOrder m_byteOrder;
410
416 Format m_format;
417
423 PixelType m_pixelType;
424
426 QMutex *m_mutex;
427
429 Camera *m_camera;
430
432 Projection *m_projection;
433
435 FileName *m_labelFileName;
436
438 FileName *m_dataFileName;
439
445 FileName *m_tempCube;
446
448 FileName *m_formatTemplateFile;
449
451 LabelAttachment m_attached;
452
454 Pvl *m_label;
455
457 int m_labelBytes;
458
460 int m_samples;
461
463 int m_lines;
464
466 int m_bands;
467
472 double m_base;
473
478 double m_multiplier;
479
481 QList<int> *m_virtualBandList;
482 };
483}
484
487
488#endif
Q_DECLARE_METATYPE(Isis::Cube *)
This allows Cube *'s to be stored in a QVariant.
Definition Blob.h:53
Buffer for reading and writing cube data.
Definition Buffer.h:53
Definition Camera.h:236
Manipulate and parse attributes of output cube filenames.
Definition CubeAttribute.h:452
This is the parent of the caching algorithms.
Definition CubeCachingAlgorithm.h:31
IO Handler for Isis Cubes.
Definition Cube.h:168
void checkAccess(QString access)
Definition Cube.cpp:762
void addCachingAlgorithm(CubeCachingAlgorithm *)
This will add the given caching algorithm to the list of attempted caching algorithms.
Definition Cube.cpp:2305
void clearIoCache()
This will clear excess RAM used for quicker IO in the cube.
Definition Cube.cpp:2321
bool hasTable(const QString &name)
Check to see if the cube contains a pvl table by the provided name.
Definition Cube.cpp:2426
ImagePolygon readFootprint() const
Read the footprint polygon for the Cube.
Definition Cube.cpp:1233
Cube()
Constructs a Cube object.
Definition Cube.cpp:50
void setPixelType(PixelType pixelType)
Used prior to the Create method, this will specify the output pixel type.
Definition Cube.cpp:1678
void latLonRange(double &minLatitude, double &maxLatitude, double &minLongitude, double &maxLongitude)
Returns the latitude and longitude range for the Cube.
Definition Cube.cpp:2942
void deleteGroup(const QString &group)
Deletes a group from the cube labels.
Definition Cube.cpp:2360
void attachLineScanTableFromIsd(nlohmann::json isd)
Definition Cube.cpp:1902
void setFormat(Format format)
Used prior to the Create method, this will specify the format of the cube, either band,...
Definition Cube.cpp:1640
bool deleteBlob(QString BlobName, QString BlobType)
This method will delete a blob label object from the cube as specified by the Blob type and name.
Definition Cube.cpp:2338
Format format() const
Definition Cube.cpp:1968
void relocateDnData(FileName dnDataFile)
Relocates the DN data for a cube to an external cube label file.
Definition Cube.cpp:1740
virtual Histogram * histogram(const int &band=1, QString msg="Gathering histogram")
This method returns a pointer to a Histogram object which allows the program to obtain and use variou...
Definition Cube.cpp:1992
int lineCount() const
Definition Cube.cpp:2127
double multiplier() const
Returns the multiplier value for converting 8-bit/16-bit pixels to 32-bit.
Definition Cube.cpp:2141
FileName realDataFileName() const
This gets the file name of the file which actually contains the DN data.
Definition Cube.cpp:2596
CubeStretch readCubeStretch(QString name="CubeStretch", const std::vector< PvlKeyword > keywords=std::vector< PvlKeyword >()) const
Read a Stretch from a cube.
Definition Cube.cpp:1279
Statistics * statistics(const int &band=1, QString msg="Gathering statistics")
This method returns a pointer to a Statistics object which allows the program to obtain and use vario...
Definition Cube.cpp:2223
void setDimensions(int ns, int nl, int nb)
Used prior to the Create method to specify the size of the cube.
Definition Cube.cpp:1588
Camera * camera()
Return a camera associated with the cube.
Definition Cube.cpp:1825
FileName externalCubeFileName() const
If this is an external cube label file, this will give you the cube dn file that this label reference...
Definition Cube.cpp:1929
LabelAttachment
Input cube label type tracker.
Definition Cube.h:245
@ ExternalLabel
The label is pointing to an external DN file - the label is also external to the data.
Definition Cube.h:254
@ GdalLabel
Definition Cube.h:255
@ AttachedLabel
The input label is embedded in the image file.
Definition Cube.h:246
@ DetachedLabel
The input label is in a separate data file from the image.
Definition Cube.h:247
PvlGroup & group(const QString &group) const
Read a group from the cube into a Label.
Definition Cube.cpp:2374
int sampleCount() const
Definition Cube.cpp:2200
void putGroup(const PvlGroup &group)
Adds a group in a Label to the cube.
Definition Cube.cpp:2439
bool isOpen() const
Test if a cube file has been opened/created.
Definition Cube.cpp:197
void setBaseMultiplier(double base, double mult)
Used prior to the Create method, this will specify the base and multiplier for converting 8-bit/16-bi...
Definition Cube.cpp:1522
bool isReadOnly() const
Test if the opened cube is read-only, that is write operations will fail if this is true.
Definition Cube.cpp:223
double base() const
Returns the base value for converting 8-bit/16-bit pixels to 32-bit.
Definition Cube.cpp:1801
void fromIsd(const FileName &fileName, Pvl &label, nlohmann::json &isd, QString access)
Initialize Cube data from a PVL label and JSON ISD.
Definition Cube.cpp:105
void openGdal(const QString &cubeFileName, QString access)
This method will open an existing geotiff for reading or reading/writing.
Definition Cube.cpp:963
void setMinMax(double min, double max)
Used prior to the Create method, this will compute a good base and multiplier value given the minimum...
Definition Cube.cpp:1539
void attachSpiceFromIsd(nlohmann::json Isd)
Definition Cube.cpp:1833
Cube * copy(FileName newFile, const CubeAttributeOutput &newFileAttributes)
Copies the cube to the new fileName.
Definition Cube.cpp:296
void create(const QString &cfile)
This method will create an isis cube for writing.
Definition Cube.cpp:434
bool hasBlob(const QString &name, const QString &type)
Check to see if the cube contains a BLOB.
Definition Cube.cpp:2402
void openCube(const QString &cubeFileName, QString access)
This method will open an existing isis cube for reading or reading/writing.
Definition Cube.cpp:841
ByteOrder byteOrder() const
Returns the byte order/endian-ness of the cube file.
Definition Cube.cpp:1813
void open(const QString &cfile, QString access="r")
This method will try to open a file as either a cube or geotiff in either read or read/write.
Definition Cube.cpp:782
PixelType pixelType() const
Definition Cube.cpp:2151
void setVirtualBands(const QList< QString > &vbands)
This allows the programmer to specify a subset of bands to work with.
Definition Cube.cpp:1695
LabelAttachment labelsAttached() const
Test if labels are attached.
Definition Cube.cpp:268
void read(Blob &blob, const std::vector< PvlKeyword > keywords=std::vector< PvlKeyword >()) const
This method will read data from the specified Blob object.
Definition Cube.cpp:1169
bool isProjected() const
Returns true if the labels of the cube appear to have a valid mapping group.
Definition Cube.cpp:212
OriginalLabel readOriginalLabel(const QString &name="IsisCube") const
Read the original PDS3 label from a cube.
Definition Cube.cpp:1256
Format
These are the possible storage formats of ISIS cubes.
Definition Cube.h:179
@ GTiff
Definition Cube.h:234
@ Tile
Cubes are stored in tile format, that is the order of the pixels in the file (on disk) is BSQ within ...
Definition Cube.h:233
@ Bsq
Cubes are stored in band-sequential format, that is the order of the pixels in the file (on disk) is:
Definition Cube.h:200
virtual int physicalBand(const int &virtualBand) const
This method will return the physical band number given a virtual band number.
Definition Cube.cpp:2166
Table readTable(const QString &name)
Read a Table from the cube.
Definition Cube.cpp:1319
bool hasGroup(const QString &group) const
Return if the cube has a specified group in the labels.
Definition Cube.cpp:2387
void setLabelSize(int labelBytes)
Used prior to the Create method, this will allocate a specific number of bytes in the label area for ...
Definition Cube.cpp:1665
OriginalXmlLabel readOriginalXmlLabel() const
Read the original PDS4 label from a cube.
Definition Cube.cpp:1298
virtual QString fileName() const
Returns the opened cube's filename.
Definition Cube.cpp:1956
void fromLabel(const FileName &fileName, Pvl &label, QString access)
Initialize Cube data from a PVL label.
Definition Cube.cpp:80
virtual ~Cube()
Destroys the Cube object.
Definition Cube.cpp:174
void write(Blob &blob, bool overwrite=true)
This method will write a blob of data (e.g.
Definition Cube.cpp:1338
bool isReadWrite() const
Test if the opened cube is read-write, that is read and write operations should succeed if this is tr...
Definition Cube.cpp:255
void setExternalDnData(FileName cubeFileWithDnData)
Used to set external dn data to cube.
Definition Cube.cpp:1605
void close(bool remove=false)
Closes the cube and updates the labels.
Definition Cube.cpp:280
History readHistory(const QString &name="IsisCube") const
Read the History from the Cube.
Definition Cube.cpp:1214
int labelSize(bool actual=false) const
Returns the number of bytes used by the label.
Definition Cube.cpp:2106
Projection * projection()
Definition Cube.cpp:2187
void setLabelsAttached(LabelAttachment attached)
Use prior to calling create, this sets whether or not to use separate label and data files.
Definition Cube.cpp:1652
virtual int bandCount() const
Returns the number of virtual bands for the cube.
Definition Cube.cpp:1784
Pvl * label() const
Returns a pointer to the IsisLabel object associated with the cube.
Definition Cube.cpp:2094
void reopen(QString access="r")
This method will reopen an isis sube for reading or reading/writing.
Definition Cube.cpp:1136
void setByteOrder(ByteOrder byteOrder)
Used prior to the Create method, this will specify the byte order of pixels, either least or most sig...
Definition Cube.cpp:1573
void createGdal(QString &dataFileName, QString &, char **papszOptions)
Definition Cube.cpp:672
Stores stretch information for a cube.
Definition CubeStretch.h:27
File name manipulation and expansion.
Definition FileName.h:100
Container of a cube histogram.
Definition Histogram.h:74
Definition History.h:38
Handles converting buffers to and from disk.
Definition ImageIoHandler.h:99
Create cube polygons, read/write polygons to blobs.
Definition ImagePolygon.h:153
Read and store original labels.
Definition OriginalLabel.h:35
Read and store original Xml labels.
Definition OriginalXmlLabel.h:32
Base class for Map Projections.
Definition Projection.h:155
Contains multiple PvlContainers.
Definition PvlGroup.h:41
Container for cube-like labels.
Definition Pvl.h:122
This class is used to accumulate statistics on double arrays.
Definition Statistics.h:93
Class for storing Table blobs information.
Definition Table.h:61
This is free and unencumbered software released into the public domain.
Definition BoxcarCachingAlgorithm.h:13
ByteOrder
Tests the current architecture for byte order.
Definition Endian.h:42
This is free and unencumbered software released into the public domain.
Definition Apollo.h:16
PixelType
Enumerations for Isis Pixel Types.
Definition PixelType.h:29