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Isis Developer Reference
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Isis Developer Reference
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Process cubes by sample. More...
#include <ProcessBySample.h>
Public Types | |
| enum | IOCubes { InPlace , InputOutput , InputOutputList } |
| enum | ProcessingDirection { LinesFirst , BandsFirst } |
Public Member Functions | |
| ProcessBySample () | |
| Isis::Cube * | SetInputCube (const QString ¶meter, int requirements=0) |
| Opens an input cube specified by the user and verifies requirements are met. | |
| Isis::Cube * | SetInputCube (const QString &file, Isis::CubeAttributeInput &att, int requirements=0) |
| Opens an input cube specified by the user with cube attributes and requirements. | |
| void | StartProcess (void funct(Isis::Buffer &inout)) |
| This method invokes the process by sample operation over a single input or output cube. | |
| void | StartProcess (void funct(Isis::Buffer &in, Isis::Buffer &out)) |
| This method invokes the process by sample operation over exactly one input and one output cube. | |
| void | StartProcess (void funct(std::vector< Isis::Buffer * > &in, std::vector< Isis::Buffer * > &out)) |
| This method invokes the process by sample operation over multiple input and output cubes. | |
| template<typename Functor > | |
| void | ProcessCubeInPlace (const Functor &funct, bool threaded=true) |
| template<typename Functor > | |
| void | ProcessCube (const Functor &funct, bool threaded=true) |
| template<typename Functor > | |
| void | ProcessCubes (const Functor &funct, bool threaded=true) |
| Cube * | SetInputCube (const QString &fname, const CubeAttributeInput &att, int requirements=0) |
| Opens an input cube specified by the user, sets the attributes, and verifies requirements are met. | |
| virtual void | SetInputCube (Isis::Cube *inCube, int requirements=0) |
| Set the InputCube vector to an opened Cube which was dynamically allocated. | |
| void | VerifyCubes (IOCubes cn) |
| Verifies the dimensions of the input/output cubes. | |
| void | SetBrickSize (int ns, int nl, int nb) |
| Sets the input and output bricks sizes to the given number of samples, lines, and bands. | |
| void | SetInputBrickSize (int ns, int nl, int nb) |
| Sets the size of all input bricks. | |
| void | SetInputBrickSize (int ns, int nl, int nb, int cube) |
| Sets the brick size of the specified cube. | |
| void | SetOutputBrickSize (int ns, int nl, int nb) |
| Sets the size of all output bricks. | |
| void | SetOutputBrickSize (int ns, int nl, int nb, int cube) |
| Sets the brick size of the specified output cube. | |
| virtual Cube * | SetOutputCube (const QString &fname, const CubeAttributeOutput &att) |
| Create the output file. | |
| virtual Isis::Cube * | SetOutputCube (const QString ¶meter) |
| Allocates a user-specified output cube whose size matches the first input cube. | |
| virtual Isis::Cube * | SetOutputCube (const QString ¶meter, const int nsamps, const int nlines, const int nbands=1) |
| Allocates a user specified output cube whose size is specified by the programmer. | |
| virtual Isis::Cube * | SetOutputCube (const QString &fname, const Isis::CubeAttributeOutput &att, const int nsamps, const int nlines, const int nbands=1) |
| Allocates a output cube whose name and size is specified by the programmer. | |
| void | SetProcessingDirection (ProcessingDirection direction) |
| Set the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst). | |
| ProcessingDirection | GetProcessingDirection () |
| Returns the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst). | |
| void | SetOutputRequirements (int outputRequirements) |
| void | SetWrap (bool wrap) |
| This wrapping option only applys when there are two or more input cubes. | |
| bool | Wraps () |
| Returns true if the wrapping option is enabled. | |
| virtual void | StartProcess (void funct(Buffer &in)) |
| Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube. | |
| virtual void | StartProcess (std::function< void(Buffer &in)> funct) |
| Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube. | |
| virtual void | StartProcess (void funct(Buffer &in, Buffer &out)) |
| Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube. | |
| virtual void | StartProcess (std::function< void(Buffer &in, Buffer &out)> funct) |
| Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube. | |
| virtual void | StartProcess (void funct(std::vector< Buffer * > &in, std::vector< Buffer * > &out)) |
| Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube. | |
| virtual void | StartProcess (std::function< void(std::vector< Buffer * > &in, std::vector< Buffer * > &out)> funct) |
| Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube. | |
| virtual void | StartProcess (void funct()) |
| In the base class, this method will invoked a user-specified function exactly one time. | |
| void | EndProcess () |
| End the processing sequence and cleans up by closing cubes, freeing memory, etc. | |
| void | Finalize () |
| Cleans up by closing cubes and freeing memory. | |
| virtual Isis::Cube * | SetOutputCubeStretch (const QString ¶meter, UserInterface *ui=nullptr) |
| Allocates a user-specified output cube whose size matches the first input cube. | |
| virtual Isis::Cube * | SetOutputCubeStretch (const QString ¶meter, const int nsamps, const int nlines, const int nbands=1, UserInterface *ui=nullptr) |
| Allocates a user specified output cube whose size is specified by the programmer. | |
| void | AddInputCube (Cube *cube, bool owned=true) |
| void | AddOutputCube (Cube *cube, bool owned=true) |
| void | CheckRequirements (const Cube *cube, const int requirements) |
| Checks to make sure the input cube meets the inputted requirements. | |
| void | ClearCubes () |
| Close owned cubes from the list and clear the list. | |
| void | ClearInputCubes () |
| Close owned input cubes from the list and clear the list. | |
| void | ClearOutputCubes () |
| Close owned output cubes from the list and clear the list. | |
| void | PropagateLabels (const bool prop) |
| This method allows the programmer to turn on/off the propagation of labels from the 1st input cube to any of the output cubes. | |
| void | PropagateLabels (const QString &cube) |
| This method allows the programmer to propagate labels from a specific secondary cube. | |
| void | PropagateTables (const bool prop) |
| This method allows the programmer to propagate input tables to the output cube (default is true) | |
| void | PropagateTables (const QString &fromName, const QList< QString > &tableNames=QList< QString >()) |
| Propagate the tables from the cube with the given filename to the output cube. | |
| void | PropagatePolygons (const bool prop) |
| This method allows the programmer to propagate input blobs to the output cube (default is true) | |
| void | PropagateHistory (const bool prop) |
| This method allows the programmer to propagate history to the output cube (default is true) | |
| void | PropagateOriginalLabel (const bool prop) |
| This method allows the programmer to propagate original labels to the output cube (default is true) | |
| Isis::Progress * | Progress () |
| This method returns a pointer to a Progress object. | |
| QString | MissionData (const QString &mission, const QString &file, bool highestVersion=false) |
| This method reads the mission specific data directory from the user preference file, makes sure that mission is available in the Isis installation, and the attaches the provided input file to the directory in order to create a full file specification. | |
| void | WriteHistory (Cube &cube) |
| Writes out the History blob to the cube. | |
| void | CalculateStatistics () |
| Calculates and stores off statistics on every band of every cube added to this process via the SetInputCube method. | |
| std::vector< Isis::Statistics * > | BandStatistics (const unsigned index) |
| Get the vector of Statistics objects for each band separately of a specified input cube. | |
| Isis::Statistics * | CubeStatistics (const unsigned index) |
| Get the Statistics object for all bands of a specified input cube. | |
Protected Attributes | |
| Isis::Progress * | p_progress |
| Pointer to a Progress object. | |
| bool | p_propagateLabels |
| Flag indicating if labels are be propagated to output cubes. | |
| bool | p_propagateTables |
| Flag indicating if tables are be propagated to output cubes. | |
| bool | p_propagatePolygons |
| Flag indicating if blobs are be propagated to output cubes. | |
| bool | p_propagateHistory |
| Flag indicating if history is to be propagated to output cubes. | |
| bool | p_propagateOriginalLabel |
| Flag indicating if original lable is to be propagated to output cubes. | |
| std::vector< std::vector< Isis::Statistics * > > | p_bandStats |
| Holds the calculated statistics for each band separately of every input cubei after the CalculateStatistics method is called. | |
| std::vector< Isis::Statistics * > | p_cubeStats |
| Holds the calculated statistics for every band together of every input cubei after the CalculateStatistics method is called. | |
| std::vector< Isis::Cube * > | InputCubes |
| A vector of pointers to opened Cube objects. | |
| std::vector< Isis::Cube * > | OutputCubes |
| A vector of pointers to allocated Cube objects. | |
| QSet< Isis::Cube * > * | m_ownedCubes |
| A list of cubes owned by this instant. | |
Process cubes by sample.
This class allows a programmer to develop a program which process input and output cubes sequentially by sample. That is, receive the input data for sample one, manipulate the data, and pass back the data for output sample one. Then proceed to the sample two and so one. This class is derived from the Process class which give many functions for setting up input and output cubes.
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inherited |
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inherited |
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inline |
References Isis::ProcessByBrick::SetWrap().
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inherited |
References Isis::Process::InputCubes, and Isis::Process::m_ownedCubes.
Referenced by Isis::Process::SetInputCube(), and Isis::Process::SetInputCube().
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inherited |
References Isis::Process::m_ownedCubes, and Isis::Process::OutputCubes.
Referenced by Isis::ProcessPolygons::AppendOutputCube(), Isis::ProcessMapMosaic::RingsSetOutputCube(), Isis::ProcessMapMosaic::RingsSetOutputCube(), Isis::Process::SetOutputCube(), Isis::ProcessMapMosaic::SetOutputCube(), Isis::ProcessMapMosaic::SetOutputCube(), and Isis::ProcessMosaic::SetOutputCube().
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inlineinherited |
Get the vector of Statistics objects for each band separately of a specified input cube.
| index | The index of the input cube in InputCubes |
References Isis::Process::p_bandStats.
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inherited |
Calculates and stores off statistics on every band of every cube added to this process via the SetInputCube method.
The newly calculated statistics are stored in two ways: as a vector where each entry is a single Statistics object for every band of a particular input cube, and as a vector where each entry is a vector of Statistics objects, for each band separately, of a particular input cube.
References Isis::Cube::bandCount(), Isis::Progress::CheckStatus(), Isis::Buffer::DoubleBuffer(), Isis::Process::InputCubes, Isis::Cube::lineCount(), Isis::Process::p_bandStats, Isis::Process::p_cubeStats, Isis::Cube::read(), Isis::LineManager::SetLine(), Isis::Progress::SetMaximumSteps(), Isis::Progress::SetText(), Isis::Buffer::size(), and Isis::toString().
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inherited |
Checks to make sure the input cube meets the inputted requirements.
| cube | Cube to check |
| requirements | Use to specify requirements for the input file. The following requirments are checked against 1) ic_base::SizeMatch checks to make sure the input cube has the same bands, samples, and lines as the first input cube open using this method, 2) ic_base::SpatialMatch checks to make sure the input cube has the same samples and lines as the first input cube, 3) ic_base::Georeferenced checks to make sure latitude/longitudes can be obtained from the input cube, 4) ic_base::FullyGeoreferenced checks to make sure latitude/longitude, phase/incidence/emission, and other geometric parameters can be obtained from the input cube, 5) ic_base::OneBand checks to make sure the input cube has exactly one band. Note, that these requirements can be logically or'ed. For example, ic_base::SpatialMatch | ic_base::georeferenced. Defaults to 0 |
| Isis::iException::Message |
References _FILEINFO_, Isis::AllMatchOrOne, Isis::Cube::bandCount(), Isis::BandMatchOrOne, Isis::Cube::fileName(), Isis::Process::InputCubes, Isis::Cube::lineCount(), Isis::OneBand, Isis::Cube::sampleCount(), Isis::SizeMatch, Isis::SpatialMatch, and Isis::IException::User.
Referenced by Isis::Process::SetInputCube(), and Isis::Process::SetInputCube().
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inherited |
Close owned cubes from the list and clear the list.
References Isis::Process::ClearInputCubes(), Isis::Process::ClearOutputCubes(), and Isis::Process::m_ownedCubes.
Referenced by Isis::Process::Finalize().
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inherited |
Close owned input cubes from the list and clear the list.
References Isis::Process::InputCubes, and Isis::Process::m_ownedCubes.
Referenced by Isis::Process::ClearCubes(), Isis::ProcessGroundPolygons::SetStatCubes(), and Isis::ProcessMapMosaic::StartProcess().
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inherited |
Close owned output cubes from the list and clear the list.
References Isis::Process::m_ownedCubes, and Isis::Process::OutputCubes.
Referenced by Isis::Process::ClearCubes().
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inlineinherited |
Get the Statistics object for all bands of a specified input cube.
| index | The index of the input cube in InputCubes |
References Isis::Process::p_cubeStats.
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virtualinherited |
End the processing sequence and cleans up by closing cubes, freeing memory, etc.
Reimplemented from Isis::Process.
Reimplemented in Isis::ProcessByTile.
References Isis::Process::EndProcess().
Referenced by Isis::ProcessByTile::EndProcess(), and Isis::ProcessByBrick::Finalize().
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virtualinherited |
Cleans up by closing cubes and freeing memory.
Reimplemented from Isis::Process.
Reimplemented in Isis::ProcessByTile.
References Isis::ProcessByBrick::EndProcess().
Referenced by Isis::ProcessByTile::Finalize().
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inherited |
Returns the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst).
The default is to process all lines of a band first.
References Isis::ProcessByBrick::BandsFirst, and Isis::ProcessByBrick::LinesFirst.
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This method reads the mission specific data directory from the user preference file, makes sure that mission is available in the Isis installation, and the attaches the provided input file to the directory in order to create a full file specification.
| mission | Name of the mission data directory |
| file | Name of the file to attach to the end of the directory |
| highestVersion | If set to true the method will return the highest version number of the given file. Therefore, file must contain question marks such as "file???.dat". See the FileName class for more information on versioned files. Defaults to false. |
References _FILEINFO_, Isis::FileName::expanded(), Isis::FileName::fileExists(), Isis::FileName::highestVersion(), Isis::IException::Io, Isis::FileName::original(), and Isis::Preference::Preferences().
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inline |
| funct | The processing function or functor which does your desired calculations. |
| threaded | True if multi-threading is supported, false otherwise. |
References Isis::ProcessByBrick::InputOutput, Isis::ProcessByBrick::ProcessCube(), and Isis::ProcessByBrick::VerifyCubes().
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inline |
| funct | The processing function or functor which does your desired calculations. |
| threaded | True if multi-threading is supported, false otherwise. |
References Isis::ProcessByBrick::InPlace, Isis::ProcessByBrick::ProcessCubeInPlace(), and Isis::ProcessByBrick::VerifyCubes().
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| funct | The processing function or functor which does your desired calculations. |
| threaded | True if multi-threading is supported, false otherwise. |
References Isis::ProcessByBrick::InputOutputList, Isis::ProcessByBrick::ProcessCubes(), and Isis::ProcessByBrick::VerifyCubes().
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inlineinherited |
This method returns a pointer to a Progress object.
References Isis::Process::p_progress.
Referenced by Isis::Equalization::applyCorrection(), Isis::HiEqualization::calculateStatistics(), and Isis::ProcessMapMosaic::StartProcess().
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This method allows the programmer to propagate history to the output cube (default is true)
| prop | Flag indicating if history is to be propagated to output cubes. |
References Isis::Process::p_propagateHistory.
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This method allows the programmer to turn on/off the propagation of labels from the 1st input cube to any of the output cubes.
By default, propagation occurs automatically in the Process class when a call to either of the SetOutputCube methods is invoked. If the program * requires no propagation then utilize this method. This method can be invoked between successive calls of SetOutputCube so that some cube will have labels propagated while others will not.
| prop | Flag indicating if labels are be propagated to output cubes. |
References Isis::Process::p_propagateLabels.
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This method allows the programmer to propagate labels from a specific secondary cube.
| cube | IString containing the name of the cube containing the labels to propagate. |
References Isis::PvlObject::findObject(), and Isis::Process::OutputCubes.
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This method allows the programmer to propagate original labels to the output cube (default is true)
| prop | Flag indicating if original labels is to be propagated to output cubes. |
References Isis::Process::p_propagateOriginalLabel.
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This method allows the programmer to propagate input blobs to the output cube (default is true)
| prop | Flag indicating if input blobs are to be propagated to output cubes. |
References Isis::Process::p_propagatePolygons.
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This method allows the programmer to propagate input tables to the output cube (default is true)
| prop | Flag indicating if input tables are to be propagated to output cubes. |
References Isis::Process::p_propagateTables.
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Propagate the tables from the cube with the given filename to the output cube.
This is done at the time this method is called, not during normal processing. The names of the tables to propagate can be provided through the second paramter, by specifing a list of table names. Not providing any list (or providing an empty list) will propagate all tables.
| fromName | QString of the name of the cube containing the tables to propagate. |
| tableNames | List of QStrings of the names of the tables to propagate; default is empty, which indicates that all tables will be propagated. |
References Isis::Cube::close(), Isis::Cube::label(), Isis::PvlObject::object(), Isis::Cube::open(), Isis::Process::OutputCubes, and Isis::Cube::read().
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Sets the input and output bricks sizes to the given number of samples, lines, and bands.
| ns | Number of samples |
| nl | Number of lines |
| nb | Number of bands |
References Isis::ProcessByBrick::SetInputBrickSize(), and Isis::ProcessByBrick::SetOutputBrickSize().
Referenced by Isis::ProcessByLine::SetBricks().
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Sets the size of all input bricks.
| ns | Number of samples |
| nl | Number of lines |
| nb | Number of bands |
References Isis::Process::InputCubes.
Referenced by Isis::ProcessByLine::SetBricks(), and Isis::ProcessByBrick::SetBrickSize().
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inherited |
Sets the brick size of the specified cube.
| ns | Number of samples |
| nl | Number of lines |
| nb | Number of bands |
| cube | The index of the cube |
References _FILEINFO_, Isis::Process::InputCubes, and Isis::IException::Programmer.
| Isis::Cube * Isis::ProcessBySample::SetInputCube | ( | const QString & | file, |
| Isis::CubeAttributeInput & | att, | ||
| int | requirements = 0 ) |
Opens an input cube specified by the user with cube attributes and requirements.
For more information see Process::SetInputCube
| file | Name of cube file |
| att | Cube attributes |
| requirements | See Process::SetInputCube for more information. Defaults to 0 |
References Isis::BandMatchOrOne, Isis::Process::SetInputCube(), and Isis::SpatialMatch.
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virtualinherited |
Opens an input cube specified by the user, sets the attributes, and verifies requirements are met.
This method is overloaded and adds the requirements of ISIS::SpatialMatch which requires all input cubes to have the same dimensions or be exactly be exactly one. For more information see Process::SetInputCube
| file | User parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM". |
| att | See Process::SetInputCube for more information. |
| requirements | See Process::SetInputCube for more information. Defaults to 0 |
| iException::Message |
Reimplemented from Isis::Process.
References Isis::AllMatchOrOne, and Isis::Process::SetInputCube().
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Opens an input cube specified by the user and verifies requirements are met.
This method is overloaded and adds the requirements of ic_base::SpatialMatch which requires all input cubes to have the same number of samples and lines. It also added the requirement ic_base::BandMatchOrOne which forces 2nd, 3rd, 4th, etc input cubes to match the number of bands in the 1st input cube or to have exactly one band. For more information see Process::SetInputCube
| parameter | User parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM". |
| requirements | See Process::SetInputCube for more information. Defaults to 0 |
Reimplemented from Isis::ProcessByBrick.
References Isis::BandMatchOrOne, Isis::Process::SetInputCube(), and Isis::SpatialMatch.
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virtualinherited |
Set the InputCube vector to an opened Cube which was dynamically allocated.
This is used if there already exists a valid opened cube
| inCube | - Pointer to input Cube |
| requirements | Requirements to check that the input cube meets. See CheckRequirements(). |
Reimplemented from Isis::Process.
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Sets the size of all output bricks.
| ns | Number of samples |
| nl | Number of lines |
| nb | Number of bands |
References Isis::Process::OutputCubes.
Referenced by Isis::ProcessByLine::SetBricks(), and Isis::ProcessByBrick::SetBrickSize().
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Sets the brick size of the specified output cube.
| ns | Number of samples |
| nl | Number of lines |
| nb | Number of bands |
| cube | The index of the cube |
References _FILEINFO_, Isis::Process::OutputCubes, and Isis::IException::Programmer.
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Create the output file.
This method assumes that the output cube size matches the input cube size. Therefore, SetInputCube() must be called before this method.
| parameter | The output file name. |
| att | An output cube attribute to define the characteristics of the output cube. |
| Isis::iException::Message | "File is not in a supported organization." |
References Isis::Process::InputCubes, and Isis::Process::SetOutputCube().
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virtualinherited |
Allocates a output cube whose name and size is specified by the programmer.
| fname | Name of the output cube to allocate |
| att | The cube attributes to use when creating the output cube. |
| ns | Number of samples to allocate |
| nl | Number of lines to allocate |
| nb | Number of bands to allocate |
| Isis::iException::Message |
References _FILEINFO_, Isis::PvlObject::addObject(), Isis::Process::AddOutputCube(), Isis::AttachedLabel, Isis::Cube::create(), Isis::PvlObject::findObject(), Isis::Process::InputCubes, Isis::Cube::label(), Isis::Cube::labelSize(), Isis::Process::p_propagateLabels, Isis::Process::p_propagateOriginalLabel, Isis::Process::p_propagatePolygons, Isis::Process::p_propagateTables, Isis::Cube::pixelType(), Isis::IException::Programmer, Isis::Real, Isis::Cube::setBaseMultiplier(), Isis::Cube::setByteOrder(), Isis::Cube::setDimensions(), Isis::Cube::setFormat(), Isis::Cube::setLabelsAttached(), Isis::Cube::setLabelSize(), Isis::Cube::setMinMax(), Isis::Cube::setPixelType(), Isis::SignedInteger, Isis::SignedWord, Isis::UnsignedByte, Isis::UnsignedInteger, Isis::UnsignedWord, Isis::IException::User, Isis::Cube::write(), and Isis::Process::WriteHistory().
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virtualinherited |
Allocates a user-specified output cube whose size matches the first input cube.
| parameter | User specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType. |
| Isis::iException::Message |
Reimplemented in Isis::ProcessMapMosaic, Isis::ProcessImport, and Isis::ProcessMosaic.
References _FILEINFO_, Isis::Process::InputCubes, Isis::IException::Programmer, and Isis::Process::SetOutputCube().
Referenced by Isis::ProcessByBrick::SetOutputCube(), Isis::ProcessImport::SetOutputCube(), Isis::Process::SetOutputCube(), Isis::ProcessImport::SetOutputCube(), Isis::Process::SetOutputCube(), Isis::ProcessImport::SetOutputCube(), Isis::Process::SetOutputCubeStretch(), Isis::ProcessPolygons::SetStatCubes(), and Isis::ProcessGroundPolygons::SetStatCubes().
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virtualinherited |
Allocates a user specified output cube whose size is specified by the programmer.
| parameter | User specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType. |
| ns | Number of samples to allocate |
| nl | Number of lines to allocate |
| nb | Number of bands to allocate |
| Isis::iException::Message |
References _FILEINFO_, Isis::Application::GetUserInterface(), Isis::IException::Programmer, and Isis::Process::SetOutputCube().
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virtualinherited |
Allocates a user specified output cube whose size is specified by the programmer.
| parameter | User specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType. |
| ns | Number of samples to allocate |
| nl | Number of lines to allocate |
| nb | Number of bands to allocate |
| ui | A user interface used to get the attributes needed. If null, the user interface will be obtained from the application. |
| Isis::iException::Message |
References _FILEINFO_, Isis::Application::GetUserInterface(), Isis::IException::Programmer, and Isis::Process::SetOutputCube().
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virtualinherited |
Allocates a user-specified output cube whose size matches the first input cube.
| parameter | User specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType. |
| ui | A user interface used to get the attributes needed for SetOutputCube. |
| Isis::iException::Message |
References _FILEINFO_, Isis::Process::InputCubes, Isis::IException::Programmer, and Isis::Process::SetOutputCubeStretch().
Referenced by Isis::Process::SetOutputCubeStretch().
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inherited |
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inherited |
Set the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst).
The default is to process all lines of a band first.
| direction | The new enumerated processing direction |
References Isis::ProcessByBrick::BandsFirst.
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inherited |
This wrapping option only applys when there are two or more input cubes.
If wrapping is enabled and the second cube is smaller than the first The brick will be wrapped back to the beginning of the second cube once brick movement reaches the end of the cube. For example, if the brick shape was a single line and the second cube only had one line then function passed into StartProcess will receive the same contents in the 2nd input buffer every time.
| wrap | Specifies whether or not to wrap |
Referenced by Isis::ProcessByLine::ProcessByLine(), and ProcessBySample().
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virtualinherited |
Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube.
This method requires that exactly one input cube be loaded. No output cubes are produced.
| funct | (Buffer &in) Receive an nxm brick in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines. |
| iException::Programmer |
Reimplemented in Isis::ProcessByLine.
References Isis::Progress::CheckStatus(), Isis::Cube::isReadWrite(), Isis::Process::p_progress, Isis::Cube::read(), Isis::Progress::SetMaximumSteps(), and Isis::Cube::write().
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virtualinherited |
Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube.
This method requires that exactly one input cube and one output cube be loaded using the SetInputCube and SetOutputCube methods.
| funct | (Buffer &in, Buffer &out) Receive an nxm brick in the input buffer and output the an nxm brick. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines. |
| iException::Programmer |
Reimplemented in Isis::ProcessByLine.
References Isis::Progress::CheckStatus(), Isis::Process::InputCubes, Isis::Process::OutputCubes, Isis::Process::p_progress, and Isis::Progress::SetMaximumSteps().
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virtualinherited |
Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube.
This method allows multiple input and output cubes.
| funct | (vector<Buffer *> &in, vector<Buffer *> &out) Receive an nxm brick in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines. |
| iException::Programmer |
References Isis::Progress::CheckStatus(), Isis::Process::InputCubes, Isis::Process::OutputCubes, Isis::Process::p_progress, Isis::Progress::SetMaximumSteps(), and Isis::ProcessByBrick::Wraps().
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inlinevirtualinherited |
In the base class, this method will invoked a user-specified function exactly one time.
In derived classes such as ProcessByLine, the StartProcess will invoke a user-specified function for every line in a cube.
| funct() | Name of your processing function |
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virtualinherited |
Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube.
This method requires that exactly one input cube be loaded. No output cubes are produced.
| funct | (Buffer &in) Receive an nxm brick in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines. |
| iException::Programmer |
Reimplemented in Isis::ProcessByTile.
References Isis::Progress::CheckStatus(), Isis::Cube::isReadWrite(), Isis::Process::p_progress, Isis::Cube::read(), Isis::Progress::SetMaximumSteps(), and Isis::Cube::write().
Referenced by Isis::ProcessByLine::StartProcess(), Isis::ProcessByLine::StartProcess(), Isis::ProcessByTile::StartProcess(), Isis::ProcessByTile::StartProcess(), Isis::ProcessBySpectra::StartProcess(), Isis::ProcessByLine::StartProcess(), StartProcess(), Isis::ProcessBySpectra::StartProcess(), Isis::ProcessByLine::StartProcess(), StartProcess(), Isis::ProcessByTile::StartProcess(), Isis::ProcessByLine::StartProcess(), StartProcess(), and Isis::ProcessBySpectra::StartProcess().
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virtualinherited |
Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube.
This method requires that exactly one input cube and one output cube be loaded using the SetInputCube and SetOutputCube methods.
| funct | (Buffer &in, Buffer &out) Receive an nxm brick in the input buffer and output the an nxm brick. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines. |
| iException::Programmer |
Reimplemented in Isis::ProcessByTile.
References Isis::Progress::CheckStatus(), Isis::Process::InputCubes, Isis::Process::OutputCubes, Isis::Process::p_progress, and Isis::Progress::SetMaximumSteps().
| void Isis::ProcessBySample::StartProcess | ( | void | functIsis::Buffer &in, Isis::Buffer &out | ) |
This method invokes the process by sample operation over exactly one input and one output cube.
Typically, this method is used for simple operations such as stretching a cube or applying various operators to a cube (add constant, multiply by constant, etc).
| funct | (Isis::Buffer &in, Isis::Buffer &out) Name of your processing function |
References Isis::ProcessByBrick::InputOutput, Isis::ProcessByBrick::StartProcess(), and Isis::ProcessByBrick::VerifyCubes().
| void Isis::ProcessBySample::StartProcess | ( | void | functIsis::Buffer &inout | ) |
This method invokes the process by sample operation over a single input or output cube.
It will be an input cube if the method SetInputCube was invoked exactly one time before calling StartProcess. It will be an output cube if the SetOutputCube method was invoked exactly one time. Typically this method can be used to obtain statistics, histograms, or other information from an input cube.
| funct | (Isis::Buffer &b) Name of your processing function |
References Isis::ProcessByBrick::InPlace, Isis::ProcessByBrick::StartProcess(), and Isis::ProcessByBrick::VerifyCubes().
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virtualinherited |
Starts the systematic processing of the input cube by moving an arbitrarily-shaped brick through the cube.
This method allows multiple input and output cubes.
| funct | (vector<Buffer *> &in, vector<Buffer *> &out) Receive an nxm brick in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines. |
| iException::Programmer |
Reimplemented in Isis::ProcessByTile.
References Isis::Progress::CheckStatus(), Isis::Process::InputCubes, Isis::Process::OutputCubes, Isis::Process::p_progress, Isis::Progress::SetMaximumSteps(), and Isis::ProcessByBrick::Wraps().
| void Isis::ProcessBySample::StartProcess | ( | void | functstd::vector< Isis::Buffer * > &in, std::vector< Isis::Buffer * > &out | ) |
This method invokes the process by sample operation over multiple input and output cubes.
Typically, this method is used when two input cubes are required for operations like ratios, differences, masking, etc.
| funct | (vector<Isis::Buffer *> &in, vector<Isis::Buffer *> &out) Name of your processing function |
References Isis::ProcessByBrick::InputOutputList, Isis::ProcessByBrick::StartProcess(), and Isis::ProcessByBrick::VerifyCubes().
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inherited |
Verifies the dimensions of the input/output cubes.
| cn | An IOCubes enumeration for one of three possible Input/Output situations: InPlace: The input cube is the output cube InputOutput: One input cube and one output cube InputOutputList: A vector of input and output cubes. The input vector is not necessarily the same length as the output vector |
| iException::Message |
References _FILEINFO_, Isis::ProcessByBrick::InPlace, Isis::Process::InputCubes, Isis::ProcessByBrick::InputOutput, Isis::ProcessByBrick::InputOutputList, Isis::Process::OutputCubes, Isis::IException::Programmer, and Isis::SpatialMatch.
Referenced by Isis::ProcessByLine::ProcessCube(), ProcessCube(), Isis::ProcessBySpectra::ProcessCube(), Isis::ProcessByTile::ProcessCube(), Isis::ProcessByLine::ProcessCubeInPlace(), ProcessCubeInPlace(), Isis::ProcessBySpectra::ProcessCubeInPlace(), Isis::ProcessByTile::ProcessCubeInPlace(), Isis::ProcessByLine::ProcessCubes(), ProcessCubes(), Isis::ProcessBySpectra::ProcessCubes(), Isis::ProcessByTile::ProcessCubes(), Isis::ProcessByLine::StartProcess(), Isis::ProcessByLine::StartProcess(), Isis::ProcessByTile::StartProcess(), Isis::ProcessByTile::StartProcess(), Isis::ProcessBySpectra::StartProcess(), Isis::ProcessByLine::StartProcess(), StartProcess(), Isis::ProcessBySpectra::StartProcess(), Isis::ProcessByLine::StartProcess(), StartProcess(), Isis::ProcessByTile::StartProcess(), Isis::ProcessByLine::StartProcess(), StartProcess(), and Isis::ProcessBySpectra::StartProcess().
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inherited |
Returns true if the wrapping option is enabled.
Referenced by Isis::ProcessByBrick::ProcessCubes(), Isis::ProcessByBrick::StartProcess(), and Isis::ProcessByBrick::StartProcess().
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inherited |
Writes out the History blob to the cube.
References Isis::History::AddEntry(), Isis::iApp, Isis::Process::InputCubes, Isis::PvlObject::object(), Isis::Process::p_propagateHistory, Isis::Cube::readHistory(), and Isis::Cube::write().
Referenced by Isis::Process::SetOutputCube(), and Isis::ProcessMapMosaic::StartProcess().
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protectedinherited |
A vector of pointers to opened Cube objects.
The pointers are established in the SetInputCube/SetInputWorkCube methods.
Referenced by Isis::Process::AddInputCube(), Isis::Process::CalculateStatistics(), Isis::Process::CheckRequirements(), Isis::Process::ClearInputCubes(), Isis::ProcessExportPds4::CreateImageLabel(), Isis::ProcessExport::CreateWorldFile(), Isis::ProcessExportPds4::displaySettings(), Isis::ProcessExportPds::ExportTable(), Isis::ProcessExportPds4::fileAreaObservational(), Isis::ProcessExportPds::FixedJP2ImageRoot(), Isis::ProcessExport::GetBuffersBIL(), Isis::ProcessExport::GetBuffersBIP(), Isis::ProcessExport::GetBuffersBSQ(), Isis::ProcessExportPds4::identificationArea(), Isis::ProcessExportPds::LineBytes(), Isis::ProcessExportPds::OutputLabel(), Isis::ProcessByBrick::ProcessCube(), Isis::ProcessExport::ProcessCubes(), Isis::ProcessByBrick::ProcessCubes(), Isis::ProcessRubberSheet::processPatchTransform(), Isis::ProcessByLine::SetBricks(), Isis::ProcessByBrick::SetInputBrickSize(), Isis::ProcessByBrick::SetInputBrickSize(), Isis::ProcessMosaic::SetInputCube(), Isis::ProcessMosaic::SetInputCube(), Isis::ProcessExport::SetInputRange(), Isis::ProcessExport::SetInputRange(), Isis::ProcessExport::SetInputRange(), Isis::ProcessByBrick::SetOutputCube(), Isis::Process::SetOutputCube(), Isis::Process::SetOutputCube(), Isis::Process::SetOutputCubeStretch(), Isis::ProcessGroundPolygons::SetStatCubes(), Isis::ProcessExportPds4::StandardAllMapping(), Isis::ProcessExportPds::StandardAllMapping(), Isis::ProcessExportPds4::standardBandBin(), Isis::ProcessExportPds::StandardImageImage(), Isis::ProcessExportPds4::standardInstrument(), Isis::ProcessExportPds::StandardJP2Image(), Isis::ProcessMosaic::StartProcess(), Isis::ProcessMapMosaic::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessExport::StartProcess(), Isis::ProcessRubberSheet::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessExport::StartProcess(), Isis::ProcessByBoxcar::StartProcess(), Isis::ProcessByQuickFilter::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessExportPds::StreamJP2ImageRoot(), Isis::ProcessByBrick::VerifyCubes(), and Isis::Process::WriteHistory().
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protectedinherited |
A list of cubes owned by this instant.
These cubes will be deleted on finalization. Process will not take ownership of cubes allocated outside of Process. It is the caller's responsibility to delete such cubes.
Referenced by Isis::Process::AddInputCube(), Isis::Process::AddOutputCube(), Isis::Process::ClearCubes(), Isis::Process::ClearInputCubes(), Isis::Process::ClearOutputCubes(), Isis::Process::Process(), and Isis::Process::~Process().
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protectedinherited |
A vector of pointers to allocated Cube objects.
The pointers are established in the SetOutputCube method.
Referenced by Isis::Process::AddOutputCube(), Isis::Process::ClearOutputCubes(), Isis::ProcessImportPds::Finalize(), Isis::ProcessImport::ProcessBil(), Isis::ProcessImport::ProcessBip(), Isis::ProcessImport::ProcessBsq(), Isis::ProcessByBrick::ProcessCube(), Isis::ProcessByBrick::ProcessCubes(), Isis::ProcessImport::ProcessJp2(), Isis::ProcessRubberSheet::processPatchTransform(), Isis::Process::PropagateLabels(), Isis::Process::PropagateTables(), Isis::ProcessMapMosaic::RingsSetOutputCube(), Isis::ProcessByLine::SetBricks(), Isis::ProcessByBrick::SetOutputBrickSize(), Isis::ProcessByBrick::SetOutputBrickSize(), Isis::ProcessMapMosaic::SetOutputCube(), Isis::ProcessMosaic::SetOutputCube(), Isis::ProcessPolygons::SetStatCubes(), Isis::ProcessGroundPolygons::SetStatCubes(), Isis::ProcessGroundPolygons::SetStatCubes(), Isis::ProcessImportPds::StartProcess(), Isis::ProcessMosaic::StartProcess(), Isis::ProcessMapMosaic::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessRubberSheet::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessByBoxcar::StartProcess(), Isis::ProcessByQuickFilter::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessImportPds::TranslatePdsProjection(), and Isis::ProcessByBrick::VerifyCubes().
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protectedinherited |
Holds the calculated statistics for each band separately of every input cubei after the CalculateStatistics method is called.
Referenced by Isis::Process::BandStatistics(), and Isis::Process::CalculateStatistics().
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protectedinherited |
Holds the calculated statistics for every band together of every input cubei after the CalculateStatistics method is called.
Referenced by Isis::Process::CalculateStatistics(), and Isis::Process::CubeStatistics().
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protectedinherited |
Pointer to a Progress object.
Referenced by Isis::Process::Process(), Isis::ProcessImport::ProcessBil(), Isis::ProcessImport::ProcessBip(), Isis::ProcessImport::ProcessBsq(), Isis::ProcessExport::ProcessCubes(), Isis::ProcessExport::ProcessExport(), Isis::ProcessImport::ProcessImport(), Isis::ProcessImport::ProcessJp2(), Isis::ProcessRubberSheet::processPatchTransform(), Isis::Process::Progress(), Isis::ProcessMosaic::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessExport::StartProcess(), Isis::ProcessRubberSheet::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessByBrick::StartProcess(), Isis::ProcessExport::StartProcess(), Isis::ProcessByBoxcar::StartProcess(), Isis::ProcessByQuickFilter::StartProcess(), Isis::ProcessByBrick::StartProcess(), and Isis::Process::~Process().
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protectedinherited |
Flag indicating if history is to be propagated to output cubes.
Referenced by Isis::Process::Process(), Isis::Process::PropagateHistory(), Isis::ProcessMapMosaic::StartProcess(), and Isis::Process::WriteHistory().
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protectedinherited |
Flag indicating if labels are be propagated to output cubes.
Referenced by Isis::Process::Process(), Isis::Process::PropagateLabels(), and Isis::Process::SetOutputCube().
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protectedinherited |
Flag indicating if original lable is to be propagated to output cubes.
Referenced by Isis::Process::Process(), Isis::Process::PropagateOriginalLabel(), and Isis::Process::SetOutputCube().
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protectedinherited |
Flag indicating if blobs are be propagated to output cubes.
Referenced by Isis::Process::Process(), Isis::Process::PropagatePolygons(), and Isis::Process::SetOutputCube().
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protectedinherited |
Flag indicating if tables are be propagated to output cubes.
Referenced by Isis::Process::Process(), Isis::Process::PropagateTables(), and Isis::Process::SetOutputCube().