ISIS Application Documentation
    Clean-up of Clementine NIR Images
  
| 
             Overview
            | 
              Parameters
               | 
              Example 1 | 
 
          Description
        
    This program will take a Clementime calibrated cube and clean up null pixels and noise.
   
 
          Categories
        
 
Applications
 
              History
          
| Ella Mae Lee | 2001-05-18 | 
      Original version Isis2: perl script nir2db.pl
     | 
 
| Steven Koechle | 2007-06-08 | 
      Converted to Isis3 from Isis2
     | 
 
 
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                Parameter Groups
            
Files
| 
                    Name
                     | 
                    Description
                     | 
 
| FROM | 
          Input cube to be cleaned
         | 
 
| TO | 
          Output cube
         | 
 
 
Options
| 
                    Name
                     | 
                    Description
                     | 
 
| REMOVE | 
                  Remove intermediate files
         | 
 
 
 | 
 
Files:
                        FROM
                         Description
                       
          The cube to be cleaned.  The cube will be ran through a series of filters to
          remove noise.
        
| 
                             Type
                            | cube | 
| 
                               File Mode
                              | input | 
| 
                               Filter
                              | 
          *.cub
         | 
 
 
Files:
                        TO
                         Description
                       
          The resultant cube containing the cleaned data.
        
| 
                             Type
                            | cube | 
| 
                               File Mode
                              | output | 
| 
                               Filter
                              | 
          *.cub
         | 
 
 
Options:
                        REMOVE
                         Description
                       
                Option to remove or leave intermediate cube files made by the application
        
| 
                             Type
                            | boolean | 
| 
                               Default
                              | 
          TRUE
         | 
 
 
 
                Example 1
      Using clemnirclean
       
                Description
                
        The use of clemnircal creates a clean NIR image.  It creates 4 images in intermediate steps.
       
                  Command Line
                  
clemnirclean 
	  from= lne4885r.cub
	  to=lne4885r.cal.cub
	  remove=no
        
	This example shows the use of clemnircal to clean up NIR images
         
 
                  GUI Screenshot
                  
| 
 clemnirclean gui 
 | 
 
	    Example GUI
             
	      Screenshot of the GUI with parameters set to leave temporary images
             
 | 
 
 
 
                   Input Image
                 
| 
 lne4885r.cub before the filter 
 | 
 
	    Input image before the filter.
           
                                Parameter Name:
                                FROM 
 
	    This is the image after it was run through clemnircal.
           
 | 
 
 
 
                        Output Images
                 
| 
 The image after the first filter 
 | 
 
	  Output image after the first boxcar filter was applied
           
	    Does a 3x3 noisefilter with null replace.
           
 | 
 
| 
 The image after the second filter 
 | 
 
	  Output image after the second boxcar filter was applied
           
	    Does a 3x3 lowpass with outside filter.
           
 | 
 
| 
 The image after the third filter 
 | 
 
	  Output image after the third boxcar filter was applied
           
	    Does a 3x3 lowpass with outside filter.
           
 | 
 
| 
 The image after the fourth filter 
 | 
 
	  Output image after the fourth boxcar filter was applied
           
	    Does a 3x3 noisefilter with average replace.
           
 | 
 
| 
 The image after the final filter 
 | 
 
	  Final output image after the all boxcar filters were applied
           
                                Parameter Name:
                                TO 
 
	    Does a 5x5 lowpass with outside filter.
           
 | 
 
 
 
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