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ISIS 3 Application Documentation


Alphabetical Listing | Old vs. New | Home

Applications by Category

Categories

Core Programs

Mission Specific Programs

Core Programs

Cameras

appjit Apply sample/line jitter offsets to the camera pointing of an observation set
cam2cam Convert camera image to a different camera image
cam2map Convert camera image to a map projection
caminfo Outputs a PVL file that contains camera information.
campt Computes geometric and photometric information at a given pixel location
camrange Compute the lat/lon range of a camera image
camstats Generates and outputs camera statistics for a cube in raw camera geometry
camtrim Trims pixels outside of lat/lon range
noproj Removes camera distortions in a raw level 1 cube creating an ideal version of the cube.
phocube Creates photometric and geometric information bands for an image cube
phohillier Apply Hillier photometric correction to multiband cubes
photomet Perform photometric corrections on a cube
photrim Trims pixels outside of phase, incidence, and emission angles
pixel2map Convert camera image to a map projection using a forward driven algorithm
ringscam2map Convert camera image to a map projection
ringspt Outputs ring radius/longitude at line/sample or reverse for Cassini images of Saturn rings
skymap Convert camera image to a skymap projection
skypt Converts between sample/line and ra/ dec positions
skyrange Compute the ra/dec range of a camera image
spicefit Fit a function to camera pointing
spiceinit Update SPICE data (kernels, pointing, and position) for a camera cube
spiceserver Spiceinit Server

Control Networks

autoseed Creates a control network for a list of images
cnet2mat Converts an Isis3 control network file to an ISIS2 match point file.
cnetadd Adds Level 1 or Level 2 images to an existing Isis3 Control Net file.
cnetbin2pvl Converts an Isis3 control network file from binary into pvl format.
cnetcheck Checks the validity of a control network
cnetedit Edit control networks
cneteditor Interactive control network editor
cnetextract Extracts portions of an existing Control Network
cnetmerge Merges multiple Control Networks into one
cnetnewradii Generate new radii from DEM for a ControlNet
cnetpvl2bin Converts an Isis3 control network file from pvl format into binary.
cnetref The application cnetref finds the best reference for a Control Point based on criteria like Emission Angle or Incidence Angle or Resolution or Interest
cnetsplit The application cnetsplit splits the input control network into user specified number of control networks.
cnetstats The application cnetstats has the ability to generate statistics and apply filters on a Control Network and outputs results in a specified output file in CSV format.
cnettable Application to get Excel compatible statistics
cnetwinnow Sets problem measures to ignored based on an examination of the residual histogram.
deltack Update camera pointing for a single image
findimageoverlaps Uses the input image footprints to find their intersections and writes these intersections to a file for used in other programs such as autoseed.
footprintinit Creates a lat/lon polygon and writes it to the image
getsnPrints Image Serial Number
jigsaw Improves camera pointing and a whole lot more!
mat2cnet Converts an ISIS2 match point file to an ISIS3 control network file.
overlapstatsCalculates the statistics of overlapping cube regions
pointreg Automatically register control measures to their point's reference
qnet Create and edit control networks
qtie Update camera pointing (SPICE) on a single cube
seedgrid Creates a control network for a Lat/Lon range

Display

cneteditor Interactive control network editor
qmos Display and analyze cube footprints
qnet Create and edit control networks
qtie Update camera pointing (SPICE) on a single cube
qview Display and analyze cubes

Filters

deriv Apply horizontal or vertical derivative
divfilter Apply a spatial high pass filter to a cube (divide)
dstripe Remove horizontal or vertical stripes/noise from a cube
gauss Filter a cube through a kernel using Gaussian weight
gradient Apply Sobel or Roberts gradient to a cube
highpass Apply a spatial high pass filter to a cube
interestcube Used to test Interest Operators
kernfilter Filter a cube through a kernel
kuwahara Filter a cube, smoothing but preserving edges
lowpass Apply lowpass or blurring filter to a cube
median Set pixels to median of surrounding pixel values
minmax Apply a minimum or maximum filter to a cube
mode Set pixels to mode of surrounding pixel values
noisefilter Apply a noise removal filter to a cube
sharpen Sharpen the features in a cube
specdivfilter Apply a spectral division filter
spechighpass Apply a spectral high pass filter to a cube
speclowpass Apply spectral low pass filter to a cube
svfilter Apply a variance or standard deviation filter to a cube
trimfilter Apply a trim filter to a cube

Fourier Domain

butterworthApply Butterworth filter for cube in fft frequency domain
fft Apply a Fourier Transform on a cube
ifft Apply an Inverse Fourier Transform on a magnitude/phase pair of cubes

Geometry

ckwriter Generate NAIF compatible SPICE CK kernels from ISIS cubes
enlarge Enlarge the pixel dimensions of an image
findrx Find and refine reseau points in a cube
flip Flip a cube from top-to-bottom
footprintmerge Find footprint islands, given a list of cubes
mirror Flip a cube from left-to-right
reduce Reduce the pixel dimensions of an image
remrx Removes Reseaus from an image
rotate Rotates a cube any number of degrees
slither Computes a transformation to shift entire lines or samples
spkwriter Generate NAIF compatible SPICE SPK kernels from ISIS cubes
translate Translate an image by given sample and line translation values
warp Warp an image using a Control Network

Import and Export

ascii2isisImport ascii file as a cube
blobdump Program to output a selected blob out to a file
ckwriter Generate NAIF compatible SPICE CK kernels from ISIS cubes
cnet2mat Converts an Isis3 control network file to an ISIS2 match point file.
ddd2isis Import msss ddd file into Isis format
edrget Download network file using FTP or HTTP protocol.
fits2isis Import fits files into Isis format
isis2ascii Export cube to an ascii file
isis2fits Exports a cube to fits format
isis2gml Convert ISIS cube to GML format
isis2pds Convert from cube to pds format
isis2raw Exports a cube to raw format
isis2std Exports a cube to a PNG, BMP, GIF, TIFF, JPEG, or JPEG 2000
maplab Add Mapping group to the labels of a cube
mat2cnet Converts an ISIS2 match point file to an ISIS3 control network file.
mimap2isisImport PDS formatted Kaguya MI MAP file to ISIS3 cube format
msi2isis Import NEAR MSI files into ISIS3 format
pds2isisImport PDS or ISIS2 image into ISIS3 cube format
raw2isis Import raw cube into Isis format
rolo2isisImport isis2 rolo image into isis3
spkwriter Generate NAIF compatible SPICE SPK kernels from ISIS cubes
std2isis Imports a cube from PNG, JPEG, JP2, BMP or TIFF format
table2cube Converts a table to a cube
tabledump Program to output a selected table to a file
vicar2isis Import Vicar image file into Isis format

Map Projection

cam2map Convert camera image to a map projection
grid Add a graticule or rectangular grid to the input image
map2cam Convert map projected image to a raw camera image
map2map Modify a cube's map projection
mapgrid Produces a user defined cartographic graticule (latitude/longitude grid) in GML form.
maplab Add Mapping group to the labels of a cube
mappt Outputs latitude/longitude at line/sample or reverse
mapsize Compute size or scale of map
maptemplate Create map file template for a projection
maptrim Trim edges of a map projected image
mosrange Compute the lat/lon range of a set camera images for mosaicking
nocam2map Map project a cube without a camera model
pixel2map Convert camera image to a map projection using a forward driven algorithm
ringscam2map Convert camera image to a map projection
ringsmappt Outputs ring radius/longitude at line/sample or reverse
skymap Convert camera image to a skymap projection

Math and Statistics

algebra Performs algebra on either one or two cubes
bandnorm Normalize bands in a cube
cnethist Generates a histogram table and plot of the r^2 Residuals of input netfiles
cubeavgAverages all bands from the input cube
cubefunc This program will apply a chosen function to the input cube
cubenorm Normalize columns or lines in a cube
decorstretch Apply a Decorrelation Stretch to a cube
fillgap Compute interpolations to replace special pixels.
fx Generalized arithmetic operations using multiple cube files
gaussstretch Apply a Gaussian Stretch to a cube.
hist Generates a histogram table of cube in text format
histeq Apply histogram equalization to a cube.
histmatch Match histograms of 2 cubes
hsv2rgb Convert HSV to RGB
makeflat Create a flat-field image for line-scan instruments
mvstats Generate multivariate Statistics for a cube
pca Apply Principal Component Analysis on a cube
poly Perform polynomial algebra on cube
ratio Divide two cubes
rgb2hsv Convert RGB to HSV
sigmastretch Apply a Sigma Stretch to a cube.
stats Generates statistics about a cube

Mosaicking

automos Create a mosaic using a list of map projected cubes
blend Blends a list of Level2 cubes together along the overlapping areas.
equalizer Tone matches map projected cubes
handmos Hand place a cube into a mosaic
mapmos Create a mosaic using map projected cubes
noseamCreates a mosaic with little to no seams using a list of map projected cubes
ringsautomos Create a mosaic using a list of map projected cubes

New Horizons

mvic2isis Import New Horizons MVIC files into Isis format

Radiometric and Photometric Correction

cosi Apply simple photometric model
cubenorm Normalize columns or lines in a cube
desmear Remove frame transfer smear
lineeq This program will normalize a cube based on line averages.
makeflat Create a flat-field image for line-scan instruments
phocube Creates photometric and geometric information bands for an image cube
phoempglobal Fit empirical photometric functions to a Hapke model at several phase angles
phoemplocal Fit empirical photometric functions to Hapke model at a single point
phohillier Apply Hillier photometric correction to multiband cubes
photemplate Create a PVL template for photometric correction
photomet Perform photometric corrections on a cube
shade Create shaded-relief cube from topographic cube
shadow High accuracy hillshade with shadow casting
shadowtau Estimate optical depth (tau) using information from shadow measurements
tonematch Matches the tone of two, single-band images

Registration and Pattern Matching

autoregtemplate Create auto registration group template
coreg Subpixel registration of a pair of images
fplanemap Produce focal plane coordinates from control net file
smtk Generate a digital elevation map (DEM) from two images using the Stereo Matcher ToolKit (SMTK)

SOCET Set Translation

socetframesettings Create a SOCET SET Framing Camera or USGSAstro FrameOffAxis settings file.
socetlinescankeywords Create the Line Scanner Sensor section of a SOCET Set Line Scanner support file

Scripting

getkey Outputs the value of a requested keyword
isiscomplete Outputs the completion command for any Isis application
isisui Outputs the command line of any ISIS application
percent Obtains the DN value at a percent in a histogram

System

cnetdiffCompare two control networks
csspckgen Creates a new Cassini PCK SPICE DB file for the latest date-versioned PCKs
cubediff Compare two cubes for differences
dempack Creates an XML representation of DEM installation packs
demprep This program prepares DEMs for use as shape models. It is not valid to run this program on anything but a DEM.
fakecube Create geometric testing cubes
kerneldbgen Creates a database of kernels
messckgen Generates MESSENGER CKs
messspkgen Generates MESSENGER SPKs
prtloganalyzer Analyze program execution efficiency in ISIS print.prt logs
pvldiffCompare two pvl files

Topography

slpmap Create slope, aspect, or percent slope data cube.

Trim and Mask

bandtrim Propagates a NULL in any band to all other bands
camtrim Trims pixels outside of lat/lon range
circle Trims data outside of a circle
crop Extracts a sub-area from a cube
cropspecial Crops specified special pixels from a cube
maptrim Trim edges of a map projected image
mask Set pixels to NULL using a mask cube
outline Outlines contiguous regions in a cube
photrim Trims pixels outside of phase, incidence, and emission angles
trim Trim edges of input cube
trimfilter Apply a trim filter to a cube
uncrop Puts a sub-cube back into its parent cube

Utility

barscale Creates a bar scale for an image
bit2bit Change the bit-type of pixel data
cathist Outputs the history of a cube
catlab Outputs the label from a cube
catoriglab Outputs the original labels of a cube
copylabel Copys labels and blobs from one cube into another cube.
cubeatt Cube attribute editor
cubediff Compare two cubes for differences
cubeit Stacks cubes in individual files into one cube
editlabModifies cube labels
errors Parses errors from a SessionLog file
explode Extracts each band of a cube into a separate one band file
findgaps Finds the gaps in a given Cube.
greyscaleGenerate a grey scale cube
grid Add a graticule or rectangular grid to the input image
kaguyasp2isis Imports a Kaguya SP (Spectral Profiler) file
makecubeGenerate a cube with a constant value
pad Add NULL padding around a cube
segment Divides a cube object into multiple output cubes in the line direction.
specadd Adds special pixels from a match cube to an input cube
specpix Replace user specified pixels with Isis special pixel values
stretch Remaps pixel values in a cube

Mission Specific Programs

Apollo

apollo2isis Import Apollo Image
apollocal Radiometric correction of Apollo Planetary images
apollofindrx Find and refine reseau points in an Apollo cube
apollopaninit Imports a complete (stitched) apollo panaramic image JP2 image
apollopanstitcher Stitches together the typically eight individual scans of an Apollo Panoramic Image
apolloremrx Removes Reseaus from an Apollo image
apollowarp Warp an image to another using control points

Cassini

ciss2isis Import a PDS Cassini ISS image file into Isis
cisscal Radiometric correction of Cassini ISS camera images.
vims2isis Converts Vims images to Isis 3 format
vimscal Radiometric correction of Cassini VIMS camera images.

Chandrayaan 1

chan1m32isis Import Chandrayaan-1 Moon Mineralogy Mapper (M3) images into ISIS cubes
mrf2isisImport PDS formatted MiniRF level 1 or level 2 image cube into Isis format cube

Clementine

clem2isis Convert Clementine data to Isis cube
clemhirescal Calibrate Clementine Hires images
clemnircal Performs radiometric corrections on Clementine NIR images
clemnirclean Clean-up of Clementine NIR Images
clemnirnoise identifiy and remove NIR noise pattern
clemuvviscal Radiometric correction of Clementine UV/VIS camera images

Dawn

dawnfc2isisImport PDS formatted Dawn FC EDR or RDR image cube into Isis format cube
dawnvir2isis Import PDS formatted Dawn VIR EDR or RDR image cube into ISIS format cube

Galileo

gllssi2isis Import a Galileo solid state imager (SSI) image EDR into Isis cube format
gllssical Perform Radiometric correction on GALILEO-SSI Imaging

Hayabusa

amica2isisImport PDS/FITS formatted Hayabusa image into ISIS cube

Kaguya

kaguyami2isisImport PDS formatted Kaguya Multiband Imager (MI) image into Isis format
kaguyatc2isisImport PDS formatted Kaguya Terrain Camera level 2 image cube into Isis format cube

Lunar Orbiter

lo2isis Import an Isis 2 Lunar Orbiter image file into Isis 3.
lopdsgen Convert from Isis 3 Lunar Orbiter cubes to the PDS format

Lunar Reconnaissance Orbiter

lronac2isis Import an LROC NAC image as an Isis cube
lronac2pds Convert from cube to pds format
lronaccal Radiometrically calibrates a LROC NAC image
lronacecho Removes echo effects from a LRO NAC image
lrowac2isis Import LRO WAC EDR images into Isis cube format
lrowac2pds Import LRO WAC EDR images into Isis cube format
lrowaccal This program calibrates LRO WAC images
lrowacpho Apply Hillier or Exponential photometric correction to multiband cubes
mrf2isisImport PDS formatted MiniRF level 1 or level 2 image cube into Isis format cube
mrf2pds Export a Mini-RF isis cube to a pds image

Mariner

mar102isis Convert Mariner10 images to Isis cubes.
mar10cal Radiometrically calibrates a Mariner10 image
mar10clean Clean-up application for Mariner10 images
mar10nonoise Noise removal from Mariner10 images
mar10restore Restoration of Mariner10 compress images

Mars Exploration Rover

mer2isis Import a Mer PDS image to Isis cube format
mical Radiometrically calibrates a Mars Exploration Rover (MER) Microscopic Imager(MI) image

Mars Express

hrsc2isisImport HRSC image

Mars Global Surveyor

moc2isis Import PDS formatted MOC image cube into Isis format cube
moccal Radiometrically calibrates a MOC image
mocevenodd Remove even/odd detector striping
mocgap Fix data gap in MOC images
mocnoise50 Removes noise from MOC narrow angle images
mocproc Processes a MOC image through Levels 0, 1, and/or 2
mocuncompress Uncompresses moc EDR data files

Mars Odyssey

thm2isis Import a Themis IR/VIS RDR or EDR
thmbasemap1 Mars Odyssey Themis RDR image cleanup
thmdriftcor Apply thermal drift correction to THEMIS images
thmnoseam Smooths the transitions between framelets.
thmproc Runs a Themis cube through the processing for levels 0 and/or 2
thmvisflat This program applies a flat field correction to Themis VIS Images
thmvistrim Trims data from framelets on Themis Vis images

Mars Reconnaissance Orbiter

crism2isisImport MRO CRISM PDS image cube into Isis format cube
ctxcal Radiometrically calibrates a CTX image
ctxevenodd Remove even/odd detector striping from MRO Ctx images
hi2isis Import HiRISE EDR images into Isis cube format
hical Performs radiometric calibration of HiRISE channel images
hicalbeta Performs radiometric calibration of HiRISE channel images
hicalproc Generate radiometrically (cosmetic) corrected HiRISE Channel products.
hiccdstitch Stitch together multiple HiRISE CCD images
hicolormos Create a color mosaic of a HiRISE cubes from an observation and update labels required by hirdrgen.
hicrop This program extracts a sub-area from a HiRise cube.
hicubeit Stack slithered HiRISE red, bg, and ir cubes
hicubenorm Normalize columns in a HiRise cube by performing a lowpass/highpass filter
hideal2pds Export an Isis3 mosaicked ideal cube from a HiRISE image to a PDS product containing related spice data.
hidestripe Corrects a known striping pattern in HiRISE images.
hidtmgen Generate PDS products from a DTM and four orthographic images.
hiequal Tonematches a set of HiRISE cubes prior to mosaicking
hifringe Gathers statistics on the first and last several samples of a channel
hifurrows Null furrowed pixels
higlob Combines HiRISE image data with all pixel data in the blobs
hijitreg Characterize HiRISE image jitter with co-registration
hijitter Correct jitter in input cubes and output corrected undistorted cubes
himos Produce an output mosaic of HiRISE CCD images from the same observation and filter.
hinoise Perform NoiseFilter processing in the Pipeline Enviornment.
hirdr2isisImport PDS formatted HiRISE RDR image cube into Isis format cube
hirdrgen Converts HiRISE RDR cubes into PDS standard format
hisharpen HiSharpen uses a linear frequency domain filter to remove the minor blur caused by the optical system of the HiRISE camera.
histat Generates statistics about a HiRISE cube and ancillary data
histitch Merge a HiRISE channel pair to make a single image
marci2isis Import an MRO MARCI image to an Isis cube
marcical This program calibrates MARCI images
marciflip Flip the framelets on an MRO MARCI image
mroctx2isis Import an MRO CTX image as an Isis cube
pds2hideal Reimport an exported hirise PDS product to an Isis 3 Ideal camera.

Messenger

mdis2isis Import MESSENGER/MIDS EDR/RDR products into ISIS cubes
mdis2pds Exports a Messenger cube back into PDS format
mdiscal Calibrates MESSENGER/MIDS EDR/RDR products
mdisddr Creates a MESSENGER DDR PDS product from an MDIS image
mdisedrinfo Computes MESSENGER/MDIS EDR geometric keyword values
mdisproc Runs a raw Messenger cube through ingestion and calibration

Near Earth Asteroid Rendezvous

msi2isis Import NEAR MSI files into ISIS3 format

New Horizons

lorri2isis Import New Horizons LORRI files into ISIS format

Viking

vdcomp Uncompresses Voyager and Viking PDS files
vik2isis Import PDS formatted Viking EDR into Isis format cube
vikcal Radiometric correction of VIKING Planetary images
vikclean Clean-up of Viking Orbiter Level 1 images
vikfixtrx Fix null tracks in a Viking image plane
viknobutter Final step of Viking Orbiter Level 1 image clean-up
viknonoodle Remove periodic noise from a Viking image
viknopepper Pepper noise Clean-up of Viking Orbiter Level 1 images
viknosalt Initial Clean-up of Viking Orbiter Level 1 images

Voyager

vdcomp Uncompresses Voyager and Viking PDS files
voy2isis Import PDS formatted Voyager EDR into Isis format cube
voycal Radiometric correction of Voyager 1 and 2 planetary images
voyramp Corrects Voyager 1 Io images from plasma torus irradiation