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Isis 3 Programmer Reference
Isis::ProcessByTile Class Reference

Process cubes by tile. More...

#include <ProcessByTile.h>

Inheritance diagram for Isis::ProcessByTile:
Inheritance graph
Collaboration diagram for Isis::ProcessByTile:
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Public Types

enum  IOCubes { InPlace, InputOutput, InputOutputList }
 
enum  ProcessingDirection { LinesFirst, BandsFirst }
 

Public Member Functions

 ProcessByTile ()
 Constructs a ProcessByTile object. More...
 
 ~ProcessByTile ()
 Destroys the ProcessByTile object. More...
 
void SetTileSize (const int ns, const int nl)
 Sets the tile size. More...
 
void StartProcess (void funct(Buffer &in))
 Starts the systematic processing of the input cube by moving an arbitrary shaped tile through the cube. More...
 
void StartProcess (void funct(Buffer &in, Buffer &out))
 Starts the systematic processing of the input cube by moving an arbitrary shaped tile through the cube. More...
 
void StartProcess (void funct(std::vector< Buffer * > &in, std::vector< Buffer * > &out))
 Starts the systematic processing of the input cube by moving an arbitrary shaped tile through the cube. More...
 
void EndProcess ()
 End the processing sequence and cleans up by closing cubes, freeing memory, etc. More...
 
void Finalize ()
 Cleans up by closing cubes and freeing memory. More...
 
template<typename Functor >
void ProcessCubeInPlace (const Functor &funct, bool threaded=true)
 
template<typename Functor >
void ProcessCube (const Functor &funct, bool threaded=true)
 
template<typename Functor >
void ProcessCubes (const Functor &funct, bool threaded=true)
 
CubeSetInputCube (const QString &parameter, int requirements=0)
 Opens an input cube specified by the user and verifies requirements are met. More...
 
CubeSetInputCube (const QString &fname, const CubeAttributeInput &att, int requirements=0)
 Opens an input cube specified by the user, sets the attributes, and verifies requirements are met. More...
 
virtual Isis::CubeSetInputCube (const QString &parameter, const int requirements=0)
 Opens an input cube specified by the user and verifies requirements are met. More...
 
virtual Isis::CubeSetInputCube (const QString &fname, const Isis::CubeAttributeInput &att, int requirements=0)
 Opens an input cube specified by the programmer and verifies requirements are met. More...
 
virtual void SetInputCube (Isis::Cube *inCube, int requirements=0)
 Set the InputCube vector to an opened Cube which was dynamically allocated. More...
 
virtual void SetInputCube (Isis::Cube *inCube, int requirements=0)
 Set the InputCube vector to an opened Cube which was dynamically allocated. More...
 
void VerifyCubes (IOCubes cn)
 Verifies the dimensions of the input/output cubes. More...
 
void SetBrickSize (int ns, int nl, int nb)
 Sets the input and output bricks sizes to the given number of samples, lines, and bands. More...
 
void SetInputBrickSize (int ns, int nl, int nb)
 Sets the size of all input bricks. More...
 
void SetInputBrickSize (int ns, int nl, int nb, int cube)
 Sets the brick size of the specified cube. More...
 
void SetOutputBrickSize (int ns, int nl, int nb)
 Sets the size of all output bricks. More...
 
void SetOutputBrickSize (int ns, int nl, int nb, int cube)
 Sets the brick size of the specified output cube. More...
 
virtual CubeSetOutputCube (const QString &fname, const CubeAttributeOutput &att)
 Create the output file. More...
 
virtual Isis::CubeSetOutputCube (const QString &parameter)
 Allocates a user-specified output cube whose size matches the first input cube. More...
 
virtual Isis::CubeSetOutputCube (const QString &parameter, const int nsamps, const int nlines, const int nbands=1)
 Allocates a user specified output cube whose size is specified by the programmer. More...
 
virtual Isis::CubeSetOutputCube (const QString &fname, const Isis::CubeAttributeOutput &att, const int nsamps, const int nlines, const int nbands=1)
 Allocates a output cube whose name and size is specified by the programmer. More...
 
void SetProcessingDirection (ProcessingDirection direction)
 Set the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst). More...
 
ProcessingDirection GetProcessingDirection ()
 Returns the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst). More...
 
void SetOutputRequirements (int outputRequirements)
 
void SetWrap (bool wrap)
 This wrapping option only applys when there are two or more input cubes. More...
 
bool Wraps ()
 Returns true if the wrapping option is enabled. More...
 
virtual void StartProcess (std::function< void(Buffer &in)> funct)
 Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube. More...
 
virtual void StartProcess (std::function< void(Buffer &in, Buffer &out)> funct)
 Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube. More...
 
virtual void StartProcess (void funct())
 In the base class, this method will invoked a user-specified function exactly one time. More...
 
virtual Isis::CubeSetOutputCubeStretch (const QString &parameter, UserInterface *ui=nullptr)
 Allocates a user-specified output cube whose size matches the first input cube. More...
 
virtual Isis::CubeSetOutputCubeStretch (const QString &parameter, const int nsamps, const int nlines, const int nbands=1, UserInterface *ui=nullptr)
 Allocates a user specified output cube whose size is specified by the programmer. More...
 
void AddInputCube (Cube *cube, bool owned=true)
 
void AddOutputCube (Cube *cube, bool owned=true)
 
void CheckRequirements (const Cube *cube, const int requirements)
 Checks to make sure the input cube meets the inputted requirements. More...
 
void ClearCubes ()
 Close owned cubes from the list and clear the list. More...
 
void ClearInputCubes ()
 Close owned input cubes from the list and clear the list. More...
 
void ClearOutputCubes ()
 Close owned output cubes from the list and clear the list. More...
 
void PropagateLabels (const bool prop)
 This method allows the programmer to turn on/off the propagation of labels from the 1st input cube to any of the output cubes. More...
 
void PropagateLabels (const QString &cube)
 This method allows the programmer to propagate labels from a specific secondary cube. More...
 
void PropagateTables (const bool prop)
 This method allows the programmer to propagate input tables to the output cube (default is true) More...
 
void PropagateTables (const QString &fromName, const QList< QString > &tableNames=QList< QString >())
 Propagate the tables from the cube with the given filename to the output cube. More...
 
void PropagatePolygons (const bool prop)
 This method allows the programmer to propagate input blobs to the output cube (default is true) More...
 
void PropagateHistory (const bool prop)
 This method allows the programmer to propagate history to the output cube (default is true) More...
 
void PropagateOriginalLabel (const bool prop)
 This method allows the programmer to propagate original labels to the output cube (default is true) More...
 
Isis::ProgressProgress ()
 This method returns a pointer to a Progress object. More...
 
QString MissionData (const QString &mission, const QString &file, bool highestVersion=false)
 This method reads the mission specific data directory from the user preference file, makes sure that mission is available in the Isis installation, and the attaches the provided input file to the directory in order to create a full file specification. More...
 
void WriteHistory (Cube &cube)
 Writes out the History blob to the cube. More...
 
void CalculateStatistics ()
 Calculates and stores off statistics on every band of every cube added to this process via the SetInputCube method. More...
 
std::vector< Isis::Statistics * > BandStatistics (const unsigned index)
 Get the vector of Statistics objects for each band separately of a specified input cube. More...
 
Isis::StatisticsCubeStatistics (const unsigned index)
 Get the Statistics object for all bands of a specified input cube. More...
 

Protected Attributes

Isis::Progressp_progress
 Pointer to a Progress object. More...
 
bool p_propagateLabels
 Flag indicating if labels are be propagated to output cubes. More...
 
bool p_propagateTables
 Flag indicating if tables are be propagated to output cubes. More...
 
bool p_propagatePolygons
 Flag indicating if blobs are be propagated to output cubes. More...
 
bool p_propagateHistory
 Flag indicating if history is to be propagated to output cubes. More...
 
bool p_propagateOriginalLabel
 Flag indicating if original lable is to be propagated to output cubes. More...
 
std::vector< std::vector< Isis::Statistics * > > p_bandStats
 Holds the calculated statistics for each band separately of every input cubei after the CalculateStatistics method is called. More...
 
std::vector< Isis::Statistics * > p_cubeStats
 Holds the calculated statistics for every band together of every input cubei after the CalculateStatistics method is called. More...
 
std::vector< Isis::Cube * > InputCubes
 A vector of pointers to opened Cube objects. More...
 
std::vector< Isis::Cube * > OutputCubes
 A vector of pointers to allocated Cube objects. More...
 
QSet< Isis::Cube * > * m_ownedCubes
 A list of cubes owned by this instant. More...
 

Private Member Functions

void SetBricks (IOCubes cn)
 
void SetBrickSizesForProcessCubeInPlace ()
 
void SetBrickSizesForProcessCube ()
 
void SetBrickSizesForProcessCubes ()
 
template<typename Functor >
void RunProcess (const Functor &wrapperFunctor, int numSteps, bool threaded)
 This method runs the given wrapper functor numSteps times with or without threading, reporting progress in both cases. More...
 
void BlockingReportProgress (QFuture< void > &future)
 This method blocks until the future reports that it is finished. More...
 
std::vector< int > CalculateMaxDimensions (std::vector< Cube * > cubes) const
 Calculates the maximum dimensions of all the cubes and returns them in a vector where position 0 is the max sample, position 1 is the max line, and position 2 is the max band. More...
 
bool PrepProcessCubeInPlace (Cube **cube, Brick **bricks)
 Prepare and check to run "function" parameter for StartProcess(void funct(Buffer &in)) and StartProcessInPlace(Functor funct) More...
 
int PrepProcessCube (Brick **ibrick, Brick **obrick)
 Prepare and check to run "function" parameter for StartProcess(void funct(Buffer &in, Buffer &out)) and StartProcessIO(Functor funct) More...
 
int PrepProcessCubes (std::vector< Buffer * > &ibufs, std::vector< Buffer * > &obufs, std::vector< Brick * > &imgrs, std::vector< Brick * > &omgrs)
 Prepare and check to run "function" parameter for StartProcess(void funct(vector<Buffer *> &in, vector<Buffer *> &out)), StartProcessIOList(Functor funct) More...
 

Private Attributes

bool p_tileSizeSet
 Indicates whether the tile size has been set. More...
 
int p_tileSamples
 Number of samples in the tile. More...
 
int p_tileLines
 Number of lines in the tile. More...
 
bool p_reverse
 Use the reverse option for constructing the Buffer objects when the Processing Direction is changed from LinesFirst to BandsFirst. More...
 
bool p_wrapOption
 Indicates whether the brick manager will wrap. More...
 
bool p_inputBrickSizeSet
 Indicates whether the brick size has been set. More...
 
bool p_outputBrickSizeSet
 Indicates whether the brick size has been set. More...
 
int p_outputRequirements
 
std::vector< int > p_inputBrickSamples
 Number of samples in the input bricks. More...
 
std::vector< int > p_inputBrickLines
 Number of lines in the input bricks. More...
 
std::vector< int > p_inputBrickBands
 Number of bands in the input bricks. More...
 
std::vector< int > p_outputBrickSamples
 Number of samples in the output bricks. More...
 
std::vector< int > p_outputBrickLines
 Number of lines in the output bricks. More...
 
std::vector< int > p_outputBrickBands
 Number of bands in the output bricks. More...
 

Detailed Description

Process cubes by tile.

This is the processing class used to move a tile through cube data. This class allows only one input cube and one output cube or one input cube. If the tile size does not evenly divide into the image the tile will be padded with Null pixels as it falls off the right and/or bottom edge of the image. The tile shape is only spatial-oriented with one band of data.

Author
2004-05-14 Jeff Anderson
History:
2005-02-08 Elizabeth Ribelin - Modified file to support Doxygen documentation
History:
2005-11-28 Jacob Danton - Modified file to allow processing with multiple input and output cubes.
History:
2006-04-03 Jacob Danton - Rewrote the code to extend ProcessByBrick class
History:
2011-08-19 Jeannie Backer - Modified unitTest to use $temporary variable instead of /tmp directory.
Todo:
2005-02-08 Jeff Anderson - add coded example, and implementation example to class documentation

Definition at line 40 of file ProcessByTile.h.

Constructor & Destructor Documentation

◆ ProcessByTile()

Isis::ProcessByTile::ProcessByTile ( )
inline

Constructs a ProcessByTile object.

Definition at line 50 of file ProcessByTile.h.

References p_tileSizeSet.

◆ ~ProcessByTile()

Isis::ProcessByTile::~ProcessByTile ( )
inline

Destroys the ProcessByTile object.

Definition at line 55 of file ProcessByTile.h.

Member Function Documentation

◆ BandStatistics()

std::vector<Isis::Statistics *> Isis::Process::BandStatistics ( const unsigned  index)
inlineinherited

Get the vector of Statistics objects for each band separately of a specified input cube.

Parameters
indexThe index of the input cube in InputCubes
Returns
vector<Statistics*> A list of statistics ordered by band

Definition at line 279 of file Process.h.

References Isis::Process::p_bandStats.

◆ BlockingReportProgress()

void Isis::ProcessByBrick::BlockingReportProgress ( QFuture< void > &  future)
privateinherited

This method blocks until the future reports that it is finished.

This monitors the progress of the future and translates it's progress values into Isis progress class calls.

Parameters
futureThe future to monitor

Definition at line 691 of file ProcessByBrick.cpp.

Referenced by Isis::ProcessByBrick::RunProcess().

◆ CalculateMaxDimensions()

vector< int > Isis::ProcessByBrick::CalculateMaxDimensions ( std::vector< Cube * >  cubes) const
privateinherited

Calculates the maximum dimensions of all the cubes and returns them in a vector where position 0 is the max sample, position 1 is the max line, and position 2 is the max band.

For example, if two cubes were passed in and the first cube had 1 sample, 1 line, and 1 band, and the second cube had 2 samples, 2 lines, and 2 bands, the max dimensions would be 2 samples, 2 lines, and 2 bands.

Parameters
cubesThe vector of cubes to calculate the maximum dimensions for.
Returns
A vector of size 3 containing the max sample dimension at position 0, the max line dimension at position 1, and the max band dimension at position 2.

Definition at line 737 of file ProcessByBrick.cpp.

◆ CalculateStatistics()

void Isis::Process::CalculateStatistics ( )
inherited

Calculates and stores off statistics on every band of every cube added to this process via the SetInputCube method.

The newly calculated statistics are stored in two ways: as a vector where each entry is a single Statistics object for every band of a particular input cube, and as a vector where each entry is a vector of Statistics objects, for each band separately, of a particular input cube.

Definition at line 824 of file Process.cpp.

References Isis::Statistics::AddData(), Isis::Cube::bandCount(), Isis::Progress::CheckStatus(), Isis::Buffer::DoubleBuffer(), Isis::Cube::lineCount(), Isis::Cube::read(), Isis::LineManager::SetLine(), Isis::Progress::SetMaximumSteps(), Isis::Progress::SetText(), Isis::Buffer::size(), and Isis::toString().

◆ CheckRequirements()

void Isis::Process::CheckRequirements ( const Cube cube,
const int  requirements 
)
inherited

Checks to make sure the input cube meets the inputted requirements.

Parameters
cubeCube to check
requirementsUse to specify requirements for the input file. The following requirments are checked against 1) ic_base::SizeMatch checks to make sure the input cube has the same bands, samples, and lines as the first input cube open using this method, 2) ic_base::SpatialMatch checks to make sure the input cube has the same samples and lines as the first input cube, 3) ic_base::Georeferenced checks to make sure latitude/longitudes can be obtained from the input cube, 4) ic_base::FullyGeoreferenced checks to make sure latitude/longitude, phase/incidence/emission, and other geometric parameters can be obtained from the input cube, 5) ic_base::OneBand checks to make sure the input cube has exactly one band. Note, that these requirements can be logically or'ed. For example, ic_base::SpatialMatch | ic_base::georeferenced. Defaults to 0
Exceptions
Isis::iException::Message

Definition at line 503 of file Process.cpp.

References Isis::Cube::bandCount(), Isis::Cube::fileName(), Isis::Cube::lineCount(), and Isis::Cube::sampleCount().

◆ ClearCubes()

void Isis::Process::ClearCubes ( )
inherited

Close owned cubes from the list and clear the list.

Definition at line 593 of file Process.cpp.

◆ ClearInputCubes()

void Isis::Process::ClearInputCubes ( )
inherited

Close owned input cubes from the list and clear the list.

Definition at line 603 of file Process.cpp.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), Isis::FileTool::saveAsReducedCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ ClearOutputCubes()

void Isis::Process::ClearOutputCubes ( )
inherited

Close owned output cubes from the list and clear the list.

Definition at line 617 of file Process.cpp.

◆ CubeStatistics()

Isis::Statistics* Isis::Process::CubeStatistics ( const unsigned  index)
inlineinherited

Get the Statistics object for all bands of a specified input cube.

Parameters
indexThe index of the input cube in InputCubes
Returns
Statistics* Collections of statistics gathered on all bands

Definition at line 293 of file Process.h.

References Isis::Process::p_cubeStats.

◆ EndProcess()

void Isis::ProcessByTile::EndProcess ( )
virtual

End the processing sequence and cleans up by closing cubes, freeing memory, etc.

Deprecated:
Please use Finalize()

Reimplemented from Isis::ProcessByBrick.

Definition at line 101 of file ProcessByTile.cpp.

◆ Finalize()

void Isis::ProcessByTile::Finalize ( )
virtual

Cleans up by closing cubes and freeing memory.

Reimplemented from Isis::ProcessByBrick.

Definition at line 110 of file ProcessByTile.cpp.

◆ GetProcessingDirection()

ProcessByBrick::ProcessingDirection Isis::ProcessByBrick::GetProcessingDirection ( )
inherited

Returns the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst).

The default is to process all lines of a band first.

Returns
The selected enumerated processing direction

Definition at line 393 of file ProcessByBrick.cpp.

◆ MissionData()

QString Isis::Process::MissionData ( const QString &  mission,
const QString &  file,
bool  highestVersion = false 
)
inherited

This method reads the mission specific data directory from the user preference file, makes sure that mission is available in the Isis installation, and the attaches the provided input file to the directory in order to create a full file specification.

Parameters
missionName of the mission data directory
fileName of the file to attach to the end of the directory
highestVersionIf set to true the method will return the highest version number of the given file. Therefore, file must contain question marks such as "file???.dat". See the FileName class for more information on versioned files. Defaults to false.

Definition at line 768 of file Process.cpp.

References Isis::FileName::expanded(), Isis::FileName::fileExists(), Isis::PvlObject::findGroup(), and Isis::FileName::highestVersion().

◆ PrepProcessCube()

int Isis::ProcessByBrick::PrepProcessCube ( Brick **  ibrick,
Brick **  obrick 
)
privateinherited

Prepare and check to run "function" parameter for StartProcess(void funct(Buffer &in, Buffer &out)) and StartProcessIO(Functor funct)

Parameters
ibrick- Pointer to first input cube brick
obrick- Pointer to first output cube brick
Returns
int
History:
2011-04-22 Sharmila Prasad - Ported from StartProcess (void funct(Buffer &in, Buffer &out))

Definition at line 846 of file ProcessByBrick.cpp.

Referenced by Isis::ProcessByBrick::ProcessCube().

◆ PrepProcessCubeInPlace()

bool Isis::ProcessByBrick::PrepProcessCubeInPlace ( Cube **  cube,
Brick **  bricks 
)
privateinherited

Prepare and check to run "function" parameter for StartProcess(void funct(Buffer &in)) and StartProcessInPlace(Functor funct)

Parameters
cube- Pointer to input or output cube depending if the input cube is available
bricks- Pointer to first cube brick to be processed
Returns
bool - If input cube is available(true/false)
History:
2011-04-22 Sharmila Prasad - Ported from StartProcess (void funct(Buffer &in))

Definition at line 779 of file ProcessByBrick.cpp.

Referenced by Isis::ProcessByBrick::ProcessCubeInPlace().

◆ PrepProcessCubes()

int Isis::ProcessByBrick::PrepProcessCubes ( std::vector< Buffer * > &  ibufs,
std::vector< Buffer * > &  obufs,
std::vector< Brick * > &  imgrs,
std::vector< Brick * > &  omgrs 
)
privateinherited

Prepare and check to run "function" parameter for StartProcess(void funct(vector<Buffer *> &in, vector<Buffer *> &out)), StartProcessIOList(Functor funct)

Parameters
ibufs- input buffer manager
obufs- output buffer manager
imgrs- input brick manager
omgrs- output brick manager
Returns
int - Number of bricks
History:
2011-04-22 Sharmila Prasad - Ported from StartProcess (void funct(vector<Buffer *> &in, vector<Buffer *> &out))

Definition at line 938 of file ProcessByBrick.cpp.

References Isis::BufferManager::begin(), and Isis::Brick::Bricks().

Referenced by Isis::ProcessByBrick::ProcessCubes().

◆ ProcessCube()

template<typename Functor >
void Isis::ProcessByTile::ProcessCube ( const Functor &  funct,
bool  threaded = true 
)
inline
See also
ProcessByBrick::ProcessCube()
Parameters
funct
threaded

Definition at line 86 of file ProcessByTile.h.

References Isis::ProcessByBrick::ProcessCube(), and Isis::ProcessByBrick::VerifyCubes().

◆ ProcessCubeInPlace()

template<typename Functor >
void Isis::ProcessByTile::ProcessCubeInPlace ( const Functor &  funct,
bool  threaded = true 
)
inline

◆ ProcessCubes()

template<typename Functor >
void Isis::ProcessByTile::ProcessCubes ( const Functor &  funct,
bool  threaded = true 
)
inline
See also
ProcessByBrick::ProcessCubes()
Parameters
funct
threaded

Definition at line 101 of file ProcessByTile.h.

References Isis::ProcessByBrick::ProcessCubes(), and Isis::ProcessByBrick::VerifyCubes().

◆ Progress()

◆ PropagateHistory()

void Isis::Process::PropagateHistory ( const bool  prop)
inherited

This method allows the programmer to propagate history to the output cube (default is true)

Parameters
propFlag indicating if history is to be propagated to output cubes.

Definition at line 737 of file Process.cpp.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagateLabels() [1/2]

void Isis::Process::PropagateLabels ( const bool  prop)
inherited

This method allows the programmer to turn on/off the propagation of labels from the 1st input cube to any of the output cubes.

By default, propagation occurs automatically in the Process class when a call to either of the SetOutputCube methods is invoked. If the program * requires no propagation then utilize this method. This method can be invoked between successive calls of SetOutputCube so that some cube will have labels propagated while others will not.

Parameters
propFlag indicating if labels are be propagated to output cubes.

Definition at line 639 of file Process.cpp.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagateLabels() [2/2]

void Isis::Process::PropagateLabels ( const QString &  cube)
inherited

This method allows the programmer to propagate labels from a specific secondary cube.

Parameters
cubeIString containing the name of the cube containing the labels to propagate.

Definition at line 650 of file Process.cpp.

References Isis::PvlObject::addGroup(), Isis::PvlObject::addObject(), Isis::PvlObject::findObject(), Isis::PvlObject::group(), Isis::PvlObject::groups(), and Isis::PvlObject::hasObject().

◆ PropagateOriginalLabel()

void Isis::Process::PropagateOriginalLabel ( const bool  prop)
inherited

This method allows the programmer to propagate original labels to the output cube (default is true)

Parameters
propFlag indicating if original labels is to be propagated to output cubes.

Definition at line 748 of file Process.cpp.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagatePolygons()

void Isis::Process::PropagatePolygons ( const bool  prop)
inherited

This method allows the programmer to propagate input blobs to the output cube (default is true)

Parameters
propFlag indicating if input blobs are to be propagated to output cubes.

Definition at line 727 of file Process.cpp.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagateTables() [1/2]

void Isis::Process::PropagateTables ( const bool  prop)
inherited

This method allows the programmer to propagate input tables to the output cube (default is true)

Parameters
propFlag indicating if input tables are to be propagated to output cubes.

Definition at line 678 of file Process.cpp.

Referenced by Isis::ProcessMapMosaic::RingsSetOutputCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ PropagateTables() [2/2]

void Isis::Process::PropagateTables ( const QString &  fromName,
const QList< QString > &  tableNames = QList<QString>() 
)
inherited

Propagate the tables from the cube with the given filename to the output cube.

This is done at the time this method is called, not during normal processing. The names of the tables to propagate can be provided through the second paramter, by specifing a list of table names. Not providing any list (or providing an empty list) will propagate all tables.

Parameters
fromNameQString of the name of the cube containing the tables to propagate.
tableNamesList of QStrings of the names of the tables to propagate; default is empty, which indicates that all tables will be propagated.
History:
2016-11-30 Ian Humphrey - Added tableNames parameter so that only specified tables will be propagated when calling this method. Note that a default of an empty QList is used to propagate all tables. References #4433.

Definition at line 698 of file Process.cpp.

References Isis::Cube::close(), Isis::Cube::label(), Isis::PvlObject::object(), Isis::PvlObject::objects(), Isis::Cube::open(), and Isis::Cube::read().

◆ RunProcess()

template<typename Functor >
void Isis::ProcessByBrick::RunProcess ( const Functor &  wrapperFunctor,
int  numSteps,
bool  threaded 
)
inlineprivateinherited

This method runs the given wrapper functor numSteps times with or without threading, reporting progress in both cases.

This method is a blocking call.

Parameters
wrapperFunctorA functor that does the reading, processing, and writing required given a ProcessIterator position in the cube.
numStepsThe end() value for the process iterator.
threadedForce threading off when set to false; threading may or may not be used if this is true.

Definition at line 280 of file ProcessByBrick.h.

References Isis::ProcessByBrick::BlockingReportProgress(), Isis::Progress::CheckStatus(), Isis::Process::p_progress, and Isis::Progress::SetMaximumSteps().

Referenced by Isis::ProcessByBrick::ProcessCube(), Isis::ProcessByBrick::ProcessCubeInPlace(), and Isis::ProcessByBrick::ProcessCubes().

◆ SetBrickSize()

void Isis::ProcessByBrick::SetBrickSize ( int  ns,
int  nl,
int  nb 
)
inherited

Sets the input and output bricks sizes to the given number of samples, lines, and bands.

Parameters
nsNumber of samples
nlNumber of lines
nbNumber of bands

Definition at line 225 of file ProcessByBrick.cpp.

◆ SetInputBrickSize() [1/2]

void Isis::ProcessByBrick::SetInputBrickSize ( int  ns,
int  nl,
int  nb 
)
inherited

Sets the size of all input bricks.

Parameters
nsNumber of samples
nlNumber of lines
nbNumber of bands

Definition at line 241 of file ProcessByBrick.cpp.

◆ SetInputBrickSize() [2/2]

void Isis::ProcessByBrick::SetInputBrickSize ( int  ns,
int  nl,
int  nb,
int  cube 
)
inherited

Sets the brick size of the specified cube.

Parameters
nsNumber of samples
nlNumber of lines
nbNumber of bands
cubeThe index of the cube

Definition at line 264 of file ProcessByBrick.cpp.

◆ SetInputCube() [1/6]

Cube * Isis::ProcessByBrick::SetInputCube ( const QString &  file,
const CubeAttributeInput att,
int  requirements = 0 
)
virtualinherited

Opens an input cube specified by the user, sets the attributes, and verifies requirements are met.

This method is overloaded and adds the requirements of ISIS::SpatialMatch which requires all input cubes to have the same dimensions or be exactly be exactly one. For more information see Process::SetInputCube

Returns
Cube*
Parameters
fileUser parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM".
attSee Process::SetInputCube for more information.
requirementsSee Process::SetInputCube for more information. Defaults to 0
Exceptions
iException::Message

Reimplemented from Isis::Process.

Definition at line 86 of file ProcessByBrick.cpp.

◆ SetInputCube() [2/6]

Isis::Cube * Isis::Process::SetInputCube
inherited

Opens an input cube specified by the programmer and verifies requirements are met.

Parameters
fnameProgrammer specified work file. For example, "myfile.cub".
attThe cube attributes to use when opening the input cube.
requirementsRequirements to check that the input cube meets. See CheckRequirements().
Returns
Cube*
Exceptions
Isis::iException::Message

Definition at line 221 of file Process.cpp.

◆ SetInputCube() [3/6]

Isis::Cube * Isis::Process::SetInputCube
inherited

Opens an input cube specified by the user and verifies requirements are met.

Returns
Cube*
Parameters
parameterUser parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM".
requirementsRequirements to check that the input cube meets. See CheckRequirements().
Exceptions
Isis::iException::Message

Definition at line 219 of file Process.cpp.

◆ SetInputCube() [4/6]

Cube * Isis::ProcessByBrick::SetInputCube ( const QString &  parameter,
int  requirements = 0 
)
virtualinherited

Opens an input cube specified by the user and verifies requirements are met.

This method is overloaded and adds the requirements of ISIS::SpatialMatch which requires all input cubes to have the same dimensions or be exactly be exactly one. For more information see Process::SetInputCube

Returns
Cube*
Parameters
parameterUser parameter to obtain file to open. Typically, the value is "FROM". For example, the user can specify on the command line FROM=myfile.cub and this method will attempt to open the cube "myfile.cub" if the parameter was set to "FROM".
requirementsSee Process::SetInputCube for more information. Defaults to 0
Exceptions
iException::Message

Reimplemented from Isis::Process.

Reimplemented in Isis::ProcessBySample, Isis::ProcessBySpectra, and Isis::ProcessByLine.

Definition at line 58 of file ProcessByBrick.cpp.

◆ SetInputCube() [5/6]

void Isis::Process::SetInputCube ( Isis::Cube inCube,
int  requirements = 0 
)
virtualinherited

Set the InputCube vector to an opened Cube which was dynamically allocated.

This is used if there already exists a valid opened cube

Author
Sharmila Prasad (5/7/2011)
Parameters
inCube- Pointer to input Cube
requirementsRequirements to check that the input cube meets. See CheckRequirements().

Definition at line 107 of file Process.cpp.

References Isis::Cube::isOpen().

◆ SetInputCube() [6/6]

void Isis::Process::SetInputCube
inherited

Set the InputCube vector to an opened Cube which was dynamically allocated.

This is used if there already exists a valid opened cube

Author
Sharmila Prasad (5/7/2011)
Parameters
inCube- Pointer to input Cube
requirementsRequirements to check that the input cube meets. See CheckRequirements().

Definition at line 224 of file Process.cpp.

◆ SetOutputBrickSize() [1/2]

void Isis::ProcessByBrick::SetOutputBrickSize ( int  ns,
int  nl,
int  nb 
)
inherited

Sets the size of all output bricks.

Parameters
nsNumber of samples
nlNumber of lines
nbNumber of bands

Definition at line 300 of file ProcessByBrick.cpp.

◆ SetOutputBrickSize() [2/2]

void Isis::ProcessByBrick::SetOutputBrickSize ( int  ns,
int  nl,
int  nb,
int  cube 
)
inherited

Sets the brick size of the specified output cube.

Parameters
nsNumber of samples
nlNumber of lines
nbNumber of bands
cubeThe index of the cube

Definition at line 323 of file ProcessByBrick.cpp.

◆ SetOutputCube() [1/4]

Isis::Cube * Isis::ProcessByBrick::SetOutputCube ( const QString &  fname,
const CubeAttributeOutput att 
)
virtualinherited

Create the output file.

This method assumes that the output cube size matches the input cube size. Therefore, SetInputCube() must be called before this method.

Parameters
parameterThe output file name.
attAn output cube attribute to define the characteristics of the output cube.
Returns
Isis::Cube Output cube.
Exceptions
Isis::iException::Message"File is not in a supported organization."

Definition at line 364 of file ProcessByBrick.cpp.

References Isis::Cube::lineCount().

Referenced by Isis::Equalization::applyCorrection(), Isis::ProcessMapMosaic::RingsSetOutputCube(), Isis::FileTool::saveAsReducedCube(), and Isis::ProcessMapMosaic::SetOutputCube().

◆ SetOutputCube() [2/4]

◆ SetOutputCube() [3/4]

Isis::Cube * Isis::Process::SetOutputCube ( const QString &  parameter)
virtualinherited

Allocates a user-specified output cube whose size matches the first input cube.

Returns
Cube*
Parameters
parameterUser specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType.
Exceptions
Isis::iException::Message

Reimplemented in Isis::ProcessMosaic, Isis::ProcessImport, and Isis::ProcessMapMosaic.

Definition at line 160 of file Process.cpp.

Referenced by Isis::FileTool::saveAsEnlargedCube(), and Isis::ProcessImport::SetOutputCube().

◆ SetOutputCube() [4/4]

Isis::Cube * Isis::Process::SetOutputCube ( const QString &  parameter,
const int  ns,
const int  nl,
const int  nb = 1 
)
virtualinherited

Allocates a user specified output cube whose size is specified by the programmer.

Returns
Cube*
Parameters
parameterUser specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType.
nsNumber of samples to allocate
nlNumber of lines to allocate
nbNumber of bands to allocate
Exceptions
Isis::iException::Message

Definition at line 229 of file Process.cpp.

◆ SetOutputCubeStretch() [1/2]

Isis::Cube * Isis::Process::SetOutputCubeStretch ( const QString &  parameter,
const int  ns,
const int  nl,
const int  nb = 1,
UserInterface ui = nullptr 
)
virtualinherited

Allocates a user specified output cube whose size is specified by the programmer.

Returns
Cube*
Parameters
parameterUser specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType.
nsNumber of samples to allocate
nlNumber of lines to allocate
nbNumber of bands to allocate
uiA user interface used to get the attributes needed. If null, the user interface will be obtained from the application.
Exceptions
Isis::iException::Message

Definition at line 270 of file Process.cpp.

References IsisAml::GetFileName(), and IsisAml::GetOutputAttribute().

◆ SetOutputCubeStretch() [2/2]

Isis::Cube * Isis::Process::SetOutputCubeStretch ( const QString &  parameter,
UserInterface ui = nullptr 
)
virtualinherited

Allocates a user-specified output cube whose size matches the first input cube.

Returns
Cube*
Parameters
parameterUser specified output file. For example, "TO" is a popular user parameter. If the user specified TO=output.cub, then this routine would allocate the file output.cub with size specified by the first opened input cube. The output pixel type will be propagated from the first loaded input cube or will use the value in the application XML file for pixelType.
uiA user interface used to get the attributes needed for SetOutputCube.
Exceptions
Isis::iException::Message

Definition at line 193 of file Process.cpp.

◆ SetProcessingDirection()

void Isis::ProcessByBrick::SetProcessingDirection ( ProcessingDirection  direction)
inherited

Set the direction the data will be read, either all lines in a single band proceeding to the next band (LinesFirst), or every band for every line proceeding to the next line (BandsFirst).

The default is to process all lines of a band first.

Parameters
directionThe new enumerated processing direction

Definition at line 380 of file ProcessByBrick.cpp.

Referenced by Isis::ImageImporter::import(), and Isis::SpectralDefinition2D::SpectralDefinition2D().

◆ SetTileSize()

void Isis::ProcessByTile::SetTileSize ( const int  ns,
const int  nl 
)

Sets the tile size.

Parameters
nsNumber of samples
nlNumber of lines

Definition at line 20 of file ProcessByTile.cpp.

◆ SetWrap()

void Isis::ProcessByBrick::SetWrap ( bool  wrap)
inherited

This wrapping option only applys when there are two or more input cubes.

If wrapping is enabled and the second cube is smaller than the first The brick will be wrapped back to the beginning of the second cube once brick movement reaches the end of the cube. For example, if the brick shape was a single line and the second cube only had one line then function passed into StartProcess will receive the same contents in the 2nd input buffer every time.

Parameters
wrapSpecifies whether or not to wrap

Definition at line 409 of file ProcessByBrick.cpp.

◆ StartProcess() [1/6]

void Isis::ProcessByBrick::StartProcess ( std::function< void(Buffer &in)>  funct)
virtualinherited

Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube.

This method requires that exactly one input cube be loaded. No output cubes are produced.

Deprecated:
Please use ProcessCubeInPlace, ProcessCube, or ProcessCubes
Parameters
funct(Buffer &in) Receive an nxm brick in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.
Exceptions
iException::Programmer

Definition at line 478 of file ProcessByBrick.cpp.

References Isis::BufferManager::begin(), Isis::Brick::Bricks(), Isis::BufferManager::end(), Isis::Cube::isReadWrite(), Isis::Cube::read(), and Isis::Cube::write().

◆ StartProcess() [2/6]

void Isis::ProcessByBrick::StartProcess ( std::function< void(Buffer &in, Buffer &out)>  funct)
virtualinherited

Starts the systematic processing of the input cube by moving an arbitrary shaped brick through the cube.

This method requires that exactly one input cube and one output cube be loaded using the SetInputCube and SetOutputCube methods.

Deprecated:
Please use ProcessCubeInPlace, ProcessCube, or ProcessCubes
Parameters
funct(Buffer &in, Buffer &out) Receive an nxm brick in the input buffer and output the an nxm brick. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.
Exceptions
iException::Programmer

Reimplemented in Isis::ProcessByLine.

Definition at line 561 of file ProcessByBrick.cpp.

References Isis::BufferManager::begin().

◆ StartProcess() [3/6]

virtual void Isis::Process::StartProcess ( void   funct())
inlinevirtualinherited

In the base class, this method will invoked a user-specified function exactly one time.

In derived classes such as ProcessByLine, the StartProcess will invoke a user-specified function for every line in a cube.

Parameters
funct()Name of your processing function

Definition at line 213 of file Process.h.

◆ StartProcess() [4/6]

void Isis::ProcessByTile::StartProcess ( void   functBuffer &in)
virtual

Starts the systematic processing of the input cube by moving an arbitrary shaped tile through the cube.

This method requires that exactly one input cube be loaded. No output cubes are produced.

Deprecated:
Please use ProcessCubeInPlace()
Parameters
funct(Buffer &in) Receive an nxm tile in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.
Exceptions
iException::Programmer

Reimplemented from Isis::ProcessByBrick.

Definition at line 63 of file ProcessByTile.cpp.

◆ StartProcess() [5/6]

void Isis::ProcessByTile::StartProcess ( void   functBuffer &in, Buffer &out)
virtual

Starts the systematic processing of the input cube by moving an arbitrary shaped tile through the cube.

This method requires that exactly one input cube and one output cube be loaded using the SetInputCube and SetOutputCube methods.

Deprecated:
Please use ProcessCube()
Parameters
funct(Buffer &in, Buffer &out) Receive an nxm tile in the input buffer and output the an nxm tile. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.
Exceptions
iException::Programmer

Reimplemented from Isis::ProcessByBrick.

Definition at line 40 of file ProcessByTile.cpp.

◆ StartProcess() [6/6]

void Isis::ProcessByTile::StartProcess ( void   functstd::vector< Buffer * > &in, std::vector< Buffer * > &out)
virtual

Starts the systematic processing of the input cube by moving an arbitrary shaped tile through the cube.

This method allows multiple input and output cubes.

Deprecated:
Please use ProcessCubes()
Parameters
funct(vector<Buffer *> &in, vector<Buffer *> &out) Receive an nxm tile in the input buffer. If n=1 and m=lines this will process by columns. Likewise if n=samples and m=1 this will process by lines.
Exceptions
iException::Programmer

Reimplemented from Isis::ProcessByBrick.

Definition at line 86 of file ProcessByTile.cpp.

◆ VerifyCubes()

void Isis::ProcessByBrick::VerifyCubes ( IOCubes  cn)
inherited

Verifies the dimensions of the input/output cubes.

Parameters
cnAn IOCubes enumeration for one of three possible Input/Output situations: InPlace: The input cube is the output cube InputOutput: One input cube and one output cube InputOutputList: A vector of input and output cubes. The input vector is not necessarily the same length as the output vector
Exceptions
iException::Message

Definition at line 120 of file ProcessByBrick.cpp.

Referenced by Isis::ProcessByLine::ProcessCube(), Isis::ProcessBySample::ProcessCube(), Isis::ProcessBySpectra::ProcessCube(), ProcessCube(), Isis::ProcessByLine::ProcessCubeInPlace(), Isis::ProcessBySample::ProcessCubeInPlace(), Isis::ProcessBySpectra::ProcessCubeInPlace(), ProcessCubeInPlace(), Isis::ProcessByLine::ProcessCubes(), Isis::ProcessBySample::ProcessCubes(), Isis::ProcessBySpectra::ProcessCubes(), and ProcessCubes().

◆ Wraps()

bool Isis::ProcessByBrick::Wraps ( )
inherited

Returns true if the wrapping option is enabled.

See also
SetWrap()
Returns
The value of the wrapping option

Definition at line 419 of file ProcessByBrick.cpp.

Referenced by Isis::ProcessByBrick::ProcessCubes().

◆ WriteHistory()

void Isis::Process::WriteHistory ( Cube cube)
inherited

Member Data Documentation

◆ InputCubes

◆ m_ownedCubes

QSet<Isis::Cube *>* Isis::Process::m_ownedCubes
protectedinherited

A list of cubes owned by this instant.

These cubes will be deleted on finalization. Process will not take ownership of cubes allocated outside of Process. It is the caller's responsibility to delete such cubes.

Definition at line 199 of file Process.h.

◆ OutputCubes

std::vector<Isis::Cube *> Isis::Process::OutputCubes
protectedinherited

◆ p_bandStats

std::vector< std::vector< Isis::Statistics * > > Isis::Process::p_bandStats
protectedinherited

Holds the calculated statistics for each band separately of every input cubei after the CalculateStatistics method is called.

Definition at line 172 of file Process.h.

Referenced by Isis::Process::BandStatistics().

◆ p_cubeStats

std::vector< Isis::Statistics * > Isis::Process::p_cubeStats
protectedinherited

Holds the calculated statistics for every band together of every input cubei after the CalculateStatistics method is called.

Definition at line 179 of file Process.h.

Referenced by Isis::Process::CubeStatistics().

◆ p_inputBrickBands

std::vector<int> Isis::ProcessByBrick::p_inputBrickBands
privateinherited

Number of bands in the input bricks.

Definition at line 830 of file ProcessByBrick.h.

◆ p_inputBrickLines

std::vector<int> Isis::ProcessByBrick::p_inputBrickLines
privateinherited

Number of lines in the input bricks.

Definition at line 828 of file ProcessByBrick.h.

◆ p_inputBrickSamples

std::vector<int> Isis::ProcessByBrick::p_inputBrickSamples
privateinherited

Number of samples in the input bricks.

Definition at line 826 of file ProcessByBrick.h.

◆ p_inputBrickSizeSet

bool Isis::ProcessByBrick::p_inputBrickSizeSet
privateinherited

Indicates whether the brick size has been set.

Definition at line 818 of file ProcessByBrick.h.

◆ p_outputBrickBands

std::vector<int> Isis::ProcessByBrick::p_outputBrickBands
privateinherited

Number of bands in the output bricks.

Definition at line 836 of file ProcessByBrick.h.

◆ p_outputBrickLines

std::vector<int> Isis::ProcessByBrick::p_outputBrickLines
privateinherited

Number of lines in the output bricks.

Definition at line 834 of file ProcessByBrick.h.

◆ p_outputBrickSamples

std::vector<int> Isis::ProcessByBrick::p_outputBrickSamples
privateinherited

Number of samples in the output bricks.

Definition at line 832 of file ProcessByBrick.h.

◆ p_outputBrickSizeSet

bool Isis::ProcessByBrick::p_outputBrickSizeSet
privateinherited

Indicates whether the brick size has been set.

Definition at line 820 of file ProcessByBrick.h.

◆ p_progress

◆ p_propagateHistory

bool Isis::Process::p_propagateHistory
protectedinherited

Flag indicating if history is to be propagated to output cubes.

Definition at line 161 of file Process.h.

◆ p_propagateLabels

bool Isis::Process::p_propagateLabels
protectedinherited

Flag indicating if labels are be propagated to output cubes.

Definition at line 149 of file Process.h.

◆ p_propagateOriginalLabel

bool Isis::Process::p_propagateOriginalLabel
protectedinherited

Flag indicating if original lable is to be propagated to output cubes.

Definition at line 165 of file Process.h.

◆ p_propagatePolygons

bool Isis::Process::p_propagatePolygons
protectedinherited

Flag indicating if blobs are be propagated to output cubes.

Definition at line 157 of file Process.h.

◆ p_propagateTables

bool Isis::Process::p_propagateTables
protectedinherited

Flag indicating if tables are be propagated to output cubes.

Definition at line 153 of file Process.h.

◆ p_reverse

bool Isis::ProcessByBrick::p_reverse
privateinherited

Use the reverse option for constructing the Buffer objects when the Processing Direction is changed from LinesFirst to BandsFirst.

Definition at line 814 of file ProcessByBrick.h.

◆ p_tileLines

int Isis::ProcessByTile::p_tileLines
private

Number of lines in the tile.

Definition at line 45 of file ProcessByTile.h.

◆ p_tileSamples

int Isis::ProcessByTile::p_tileSamples
private

Number of samples in the tile.

Definition at line 44 of file ProcessByTile.h.

◆ p_tileSizeSet

bool Isis::ProcessByTile::p_tileSizeSet
private

Indicates whether the tile size has been set.

Definition at line 43 of file ProcessByTile.h.

Referenced by ProcessByTile().

◆ p_wrapOption

bool Isis::ProcessByBrick::p_wrapOption
privateinherited

Indicates whether the brick manager will wrap.

Definition at line 817 of file ProcessByBrick.h.


The documentation for this class was generated from the following files:

U.S. Department of the Interior | U.S. Geological Survey
ISIS | Privacy & Disclaimers | Astrogeology Research Program
To contact us, please post comments and questions on the USGS Astrogeology Discussion Board
To report a bug, or suggest a feature go to: ISIS Github
File Modified: 07/13/2023 15:21:44