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ISIS Application Documentation

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Alphabetical Listing of Applications

algebra Performs algebra on either one or two cubes
amica2isisImport PDS/FITS formatted Hayabusa image into ISIS cube
amicacal Calibrates Hayabusa 1 AMICA images
apollo2isis Import Apollo Image
apollocal Calibration of Apollo 15 metric images.
apollofindrx Find and refine reseau points in an Apollo cube
apollopaninit Imports a complete (stitched) apollo panaramic image JP2 image
apollopanstitcher Stitches together the typically eight individual scans of an Apollo Panoramic Image
apolloremrx Removes Reseaus from an Apollo image
apollowarp Warp an image to another using control points
appjit Apply sample/line jitter offsets to the camera pointing of an observation set
ascii2isisImport ascii file as a cube
automos Create a mosaic using a list of map projected cubes
autoregtemplate Create auto registration group template
autoseed Creates a control network for a list of images
bandnorm Normalize bands in a cube
bandtrim Propagates a NULL in any band to all other bands
barscale Creates a bar scale for an image
bit2bit Change the bit-type of pixel data
blend Blends a list of Level2 cubes together along the overlapping areas.
blobdump Program to output a selected blob out to a file
butterworthApply Butterworth filter for cube in fft frequency domain
cam2cam Convert camera image to a different camera image
cam2map Convert camera image to a map projection
camcoeffs This program calculates TRANSX,TRANSY from TRANSS, TRANSL for iak kernels
camdev Creates photometric and geometric information bands for an image cube
caminfo Outputs a PVL file that contains camera information.
campt Computes geometric and photometric information at a given pixel location
camrange Compute the lat/lon range of a camera image
camstats Generates and outputs camera statistics for a cube in raw camera geometry
camtestPerform basic camera accuracy tests
camtrim Trims pixels outside of lat/lon range
cathist Outputs the history of a cube
catlab Outputs the label from a cube
catoriglab Outputs the original labels of a cube
center Compute the center of mass of a single-band cube
chan1m32isis Import Chandrayaan-1 Moon Mineralogy Mapper (M3) images into ISIS cubes
circle Trims data outside of a circle
ciss2isis Import a PDS Cassini ISS image file into Isis
cisscal Radiometric correction of Cassini ISS camera images.
ckwriter Generate NAIF compatible SPICE CK kernels from ISIS cubes
clem2isis Convert Clementine data to Isis cube
clemhirescal Calibrate Clementine Hires images
clemnircal Performs radiometric corrections on Clementine NIR images
clemnirclean Clean-up of Clementine NIR Images
clemnirnoise identifiy and remove NIR noise pattern
clemuvviscal Radiometric correction of Clementine UV/VIS camera images
cnet2dem Create a digital elevation model from one or more control network files.
cnet2mat Converts an Isis control network file to an ISIS2 match point file.
cnetadd Adds Level 1 or Level 2 images to an existing Isis Control Net file.
cnetbin2pvl Converts an Isis control network file from binary into pvl format.
cnetcheck Checks the validity of a control network
cnetcombinept Combine one to many control networks with common control points.
cnetdiffCompare two control networks
cnetedit Edit control networks
cneteditor Interactive control network editor
cnetextract Extracts portions of an existing Control Network
cnethist Generates a histogram table and plot of the r^2 Residuals of input netfiles
cnetmerge Merges multiple Control Networks into one
cnetnewradii Generate new radii from DEM for a ControlNet
cnetpvl2bin Converts an Isis control network file from pvl format into binary.
cnetref The application cnetref finds the best reference for a Control Point based on criteria like Emission Angle or Incidence Angle or Resolution or Interest
cnetsplit The application cnetsplit splits the input control network into user specified number of control networks.
cnetstats The application cnetstats has the ability to generate statistics and apply filters on a Control Network and outputs results in a specified output file in CSV format.
cnettable Application to get Excel compatible statistics
cnetthinner Generate an updated control network with fewer points, with efficient spatial distributed across images.
cnetwinnow Sets problem measures to ignored based on an examination of the residual histogram.
copylabel Copys labels and blobs from one cube into another cube.
coreg Subpixel registration of a pair of images
cosi Apply simple photometric model
crism2isisImport MRO CRISM PDS image cube into Isis format cube
crop Extracts a sub-area from a cube
cropspecial Crops specified special pixels from a cube
csminit Attach a CSM model state to a cube.
csspckgen Creates a new Cassini PCK SPICE DB file for the latest date-versioned PCKs
csv2table Convert a CSV file to a table and attach it to a cube
ctxcal Radiometrically calibrates a CTX image
ctxevenodd Remove even/odd detector striping from MRO Ctx images
cubeatt Cube attribute editor
cubeavgAverages all bands from the input cube
cubediff Compare two cubes for differences
cubefunc This program will apply a chosen function to the input cube
cubeit Stacks individual cubes into one cube
cubenorm Normalize columns or lines in a cube
dawnfc2isisImport PDS formatted Dawn FC EDR or RDR image cube into Isis format cube
dawnvir2isis Import PDS formatted Dawn VIR EDR or RDR image cube into ISIS format cube
ddd2isis Import msss ddd file into Isis format
decorstretch Apply a Decorrelation Stretch to a cube
deltack Update camera pointing for a single image
dempack Creates an XML representation of DEM installation packs
demprep This program prepares DEMs for use as shape models. It is not valid to run this program on anything but a DEM.
deriv Apply horizontal or vertical derivative
desmear Remove frame transfer smear
desmile Resample an image to correct for spectral smile
divfilter Apply a spatial high pass filter to a cube (divide)
dsk2isis Converts NAIF DSK plate model to ISIS format
dstripe Remove horizontal or vertical stripes/noise from a cube
editlabModifies cube labels
eis2isis Import Clipper EIS NAC files into ISIS format
enlarge Enlarge the pixel dimensions of an image
equalizer Tone matches map projected cubes
errors Parses errors from a SessionLog file
explode Extracts each band of a cube into a separate one band file
fakecube Create geometric testing cubes
fft Apply a Fourier Transform on a cube
fillgap Compute interpolations to replace special pixels.
findfeatures Feature-based matching algorithms used to create ISIS control networks
findgaps Finds the gaps in a given Cube.
findimageoverlaps Uses the input image footprints to find their intersections and writes these intersections to a file for used in other programs such as autoseed.
findrx Find and refine reseau points in a cube
fits2isis Import fits files into Isis format
flip Flip a cube from top-to-bottom
footprintinit Creates a lat/lon polygon and writes it to the image
footprintmerge Find footprint islands, given a list of cubes
fplanemap Produce focal plane coordinates from control net file
framestitch Stitches even and odd frames from push frame cubes back into a single cube.
fx Apply generalized arithmetic operations using multiple cube files
gauss Filter a cube through a kernel using Gaussian weight
gaussstretch Apply a Gaussian Stretch to a cube.
getkey Outputs the value of a requested keyword
getsnPrints Image Serial Number
gllnims2isis Import a Galileo Near Infrared Mapping Spectrometer (NIMS) cube into ISIS cube format. Note: This application only works with the original PDS3 archive. This routine was created to restore the NIMS tube/gcube data and migrate to PDS4.
gllssi2isis Import a Galileo solid state imager (SSI) image EDR into Isis cube format
gllssical Perform Radiometric correction on GALILEO-SSI Imaging
gradient Apply Sobel or Roberts gradient to a cube
greyscaleGenerate a grey scale cube
grid Add a graticule or rectangular grid to the input image
handmos Hand place a cube into a mosaic
hi2isis Import HiRISE EDR images into Isis cube format
hical Performs radiometric calibration of HiRISE channel images
hicalbeta Performs radiometric calibration of HiRISE channel images
hicalproc Generate radiometrically (cosmetic) corrected HiRISE Channel products.
hiccdstitch Stitch together multiple HiRISE CCD images
hicolormos Create a color mosaic of HiRISE cubes and update labels (required by hirdrgen).
hicrop This program extracts a sub-area from a HiRise cube.
hicubeit Stack slithered HiRISE red, bg, and ir cubes
hicubenorm Normalize columns in a HiRise cube by performing a lowpass/highpass filter
hideal2pds Export an Isis mosaicked ideal cube from a HiRISE image to a PDS product containing related spice data.
hidestripe Corrects a known striping pattern in HiRISE images.
hidtmgen Generates PDS products from a DTM and/or orthorectified images.
hiequal Tonematches a set of HiRISE cubes prior to mosaicking
hifringe Gathers statistics on the first and last several samples of a channel
hifurrows Null furrowed pixels
highpass Apply a spatial high pass filter to a cube
higlob Combines HiRISE image data with all pixel data in the blobs
hijitreg Characterize HiRISE image jitter with co-registration
hijitter Correct jitter in input cubes and output corrected undistorted cubes
himos Produce an output mosaic of HiRISE CCD images from the same observation and filter.
hinoise Perform NoiseFilter processing in the Pipeline Enviornment.
hirdr2isisImport PDS formatted HiRISE RDR image cube into Isis format cube
hirdrgen Converts HiRISE RDR cubes into PDS standard format
hisharpen HiSharpen uses a linear frequency domain filter to remove the minor blur caused by the optical system of the HiRISE camera.
hist Generates a histogram table of cube in text format
histat Generates statistics about a HiRISE cube and ancillary data
histeq Apply histogram equalization to a cube.
histitch Merge a HiRISE channel pair to make a single image
histmatch Match histograms of 2 cubes
hrsc2isisImport HRSC image
hsv2rgb Convert HSV to RGB
hyb1pds4gen Convert Hayabusa1 image from from ISIS cube to PDS4 format
hyb2onc2isisImport PDS/FITS formatted Hayabusa2 image into ISIS cube
hyb2oncal Calibrates Hayabusa 2 ONC-T images. Calibration includes bias and dark current correction as well as flat-field correction. No smear or point spread is being currently corrected (lack of models to correct for this currently). Also, since no radiance calibration paramters could not be determined for the individual filters, the output will be DNs (not radiance or I/F). The wide-angle instruments, ONC-W1 and ONC-W2, do not have flat-field correction.
ifft Apply an Inverse Fourier Transform on a magnitude/phase pair of cubes
interestcube Create interest cube
ipce Integrated Photogrammetric Control Environment
isis2ascii Export cube to an ascii file
isis2fits Exports a cube to fits format
isis2gml Convert ISIS cube to GML format
isis2pds Convert from ISIS cube to PDS 3 or PDS 4 format
isis2raw Exports a cube to raw format
isis2std Exports a cube to PNG, BMP, TIFF, JPEG, or JPEG 2000
isiscomplete Outputs the completion command for any Isis application
isisdataeval Evaluate ISISDATA structure and validity
isisexport Convert from ISIS cube to another format
isisimport Convert from an external format, non-ISIS format using template files to an ISIS Cube.
isisminer Run a series of algorithms (Strategies) that perform various operations on input sources (Resources)
isisui Outputs the command line of any ISIS application
jigsaw Improves image alignment by updating camera geometry attached to cubes.
jitterfit Characterize jitter for rolling shutter images.
junocam2isisImport PDS formatted JunoCam images into ISIS cube format
kaguyami2isisImport PDS formatted Kaguya Multiband Imager (MI) image into Isis format
kaguyasp2ascii Converts Kaguya SP (Spectral Profiler) file to a tab delimited text file
kaguyasp2isis Imports a Kaguya SP (Spectral Profiler) file (deprecated)
kaguyatc2isis Import L2B0 or L2B2 Kaguya TC image to ISIS cube.
kerneldbgen Creates a database of kernels
kernfilter Filter a cube through a kernel
kuwahara Filter a cube, smoothing but preserving edges
leisa2isis Import New Horizons LEISA files into ISIS format
lineeq This program will normalize a cube based on line averages.
lo2isis Import an Isis 2 Lunar Orbiter image file into Isis.
lopdsgen Convert from Isis Lunar Orbiter cubes to the PDS format
lorri2isis Import New Horizons LORRI files into ISIS format
lowpass Apply lowpass or blurring filter to a cube
lrolola2isis Imports LIDAR data from LRO LOLA instrument.
lromakeflat Create a flat-field image for line-scan, push-frame, and framing instruments
lronac2isis Import an LROC NAC image as an Isis cube
lronac2pds Convert from cube to pds format
lronaccal Radiometrically calibrates a LROC NAC image
lronacecho Removes echo effects from a LRO NAC image
lronacpho Apply general LROC NAC photometric correction to multiband cubes
lrowac2isis Import LRO WAC EDR images to ISIS cube format
lrowac2pds Convert from cube to PDS IMG format
lrowaccal This program calibrates LRO WAC images
lrowacpho Apply Hillier or Exponential photometric correction to multiband cubes
lrowacphomap Apply Hapke bidirectional reflectance model photometric correction to multiband cubes
m3loc2net Creates a control network containing ground points either using a Chandrayaan LOC file or the image camera for lat/lon/radii values.
makecubeGenerate a cube with a constant value
makeflat Create a flat-field image for line-scan instruments
map2cam Convert map projected image to a raw camera image
map2map Modify a cube's map projection
mapgrid Produces a user defined cartographic graticule (latitude/longitude grid) in GML form.
maplab Add Mapping group to the labels of a cube
mapmos Create a mosaic using map projected cubes
mappt Outputs latitude/longitude at line/sample or reverse
mapsize Compute size or scale of map
maptemplate Create map file template for a projection
maptrim Trim edges of a map projected image
mar102isis Convert Mariner10 images to Isis cubes.
mar10cal Radiometrically calibrates a Mariner10 image
mar10clean Clean-up application for Mariner10 images
mar10nonoise Noise removal from Mariner10 images
mar10restore Restoration of Mariner10 compress images
marci2isis Import an MRO MARCI image to an Isis cube
marcical This program calibrates MARCI images
marciflip Flip the framelets on an MRO MARCI image
mask Set pixels to NULL using a mask cube
mat2cnet Converts an ISIS2 match point file to an ISIS control network file.
mdis2isis Import MESSENGER/MDIS EDR/RDR products into ISIS cubes
mdis2pds Exports a Messenger cube back into PDS format
mdiscal Calibrates MESSENGER/MIDS EDR/RDR products
mdisddr Creates a MESSENGER DDR PDS product from an MDIS image
mdisedrinfo Computes MESSENGER/MDIS EDR geometric keyword values
mdisproc Runs a raw Messenger cube through ingestion and calibration
median Set pixels to median of surrounding pixel values
mer2isis Import a Mer PDS image to Isis cube format
messckgen Generates MESSENGER CKs
messspkgen Generates MESSENGER SPKs
mical Radiometrically calibrates a Mars Exploration Rover (MER) Microscopic Imager(MI) image
mimap2isisImport PDS formatted Kaguya MI MAP file to ISIS cube format
minmax Apply a minimum or maximum filter to a cube
mirror Flip a cube from left-to-right
moc2isis Import PDS formatted MOC image cube into Isis format cube
moccal Radiometrically calibrates a MOC image
mocevenodd Remove even/odd detector striping
mocgap Fix data gap in MOC images
mocnoise50 Removes noise from MOC narrow angle images
mocproc Processes a MOC image through Levels 0, 1, and/or 2
mocuncompress Uncompresses moc EDR data files
mode Set pixels to mode of surrounding pixel values
mosrange Compute the lat/lon range of a set of camera images for mosaicking
mrf2isisImport PDS formatted MiniRF level 1 or level 2 image cube into Isis format cube
mrf2pds Export a Mini-RF isis cube to a pds image
mroctx2isis Import an MRO CTX image as an Isis cube
msi2isis Import NEAR MSI files into ISIS format
mvic2isis Import New Horizons MVIC files into Isis format
mvstats Generate multivariate Statistics for a cube
nirs2isis Import Hayabusa NIRS FITS files into ISIS format
nocam2map Map project a cube without a camera model
noisefilter Apply a noise removal filter to a cube
noproj Removes camera distortions in a raw level 1 cube creating an ideal version of the cube.
noseamCreate a mosaic with little to no seams using a list of map projected cubes
ocams2isis Import OSIRIS-REx Camera Suite (OCAMS) files into ISIS format
outline Outlines contiguous regions in a cube
overlapstatsCalculates the statistics of overlapping cube regions
pad Add NULL padding around a cube
pca Apply Principal Component Analysis on a cube
pds2hideal Reimport an exported hirise PDS product to an Isis Ideal camera.
pds2isisImport PDS or ISIS2 image into ISIS cube format
percent Obtains the DN value at a percent in a histogram
phocube Create photometric and geometric information bands for an image cube
phoempglobal Fit empirical photometric functions to a Hapke model at several phase angles
phoemplocal Fit empirical photometric functions to Hapke model at a single point
phohillier Apply Hillier photometric correction to multiband cubes
photemplate Create a PVL template for photometric correction
photomet Perform photometric corrections on a cube
photrim Trims pixels outside of phase, incidence, and emission angles
pixel2map Convert camera image to a map projection using a forward driven algorithm
pointreg Automatically register control measures to their point's reference
poly Perform polynomial algebra on cube
prtloganalyzer Analyze program execution efficiency in ISIS print.prt logs
pvldiffCompare two pvl files
qmos Display and analyze cube footprints
qnet Create and edit control networks
qtie Update camera pointing (SPICE) on a single cube
qview Display and analyze cubes
ratio Divide two cubes
raw2isis Import raw cube into Isis format
reduce Reduce the pixel dimensions of an image
remrx Removes Reseaus from an image
rgb2hsv Convert RGB to HSV
ringsautomos Create a mosaic using a list of map projected cubes
ringscam2map Convert camera image to a map projection
ringsmappt Outputs ring radius/longitude at line/sample or reverse
ringspt Outputs ring radius/longitude at line/sample or reverse for Cassini images of Saturn rings
rolo2isisImport isis2 rolo image into isis
rososiris2isis Import PDS formatted Rosetta OSIRIS image into an ISIS cube
rosvirtis2isis Import PDS formatted Rosetta VIRTIS image into an ISIS cube.
rotate Rotates a cube any number of degrees
seedgrid Creates a control network for a Lat/Lon range
segment Divides a cube object into multiple output cubes in the line direction.
shade Create shaded-relief cube from topographic cube
shadow Create a high accuracy hillshade with shadow casting
shadowtau Estimate optical depth (tau) using information from shadow measurements
sharpen Sharpen the features in a cube
sigmastretch Apply a Sigma Stretch to a cube.
skymap Convert camera image to a skymap projection
skypt Converts between sample/line and ra/ dec positions
skyrange Compute the ra/dec range of a camera image
slither Computes a transformation to shift entire lines or samples
slpmap Create slope, aspect, or percent slope data cube.
smtk Generate a digital elevation map (DEM) from two images using the Stereo Matcher ToolKit (SMTK)
socetframesettings Create a SOCET SET Framing Camera or USGSAstro FrameOffAxis settings file.
socetlinescankeywords Create the Line Scanner Sensor section of a SOCET Set Line Scanner support file
specadd Adds special pixels from a match cube to an input cube
specdivfilter Apply a spectral division filter
spechighpass Apply a spectral high pass filter to a cube
speclowpass Apply spectral low pass filter to a cube
specpix Replace user specified pixels with Isis special pixel values
spicefit Fit a function to camera pointing
spiceinit Update SPICE data (kernels, pointing, and position) for a camera cube
spiceserver Spiceinit Server
spkwriter Generate NAIF compatible SPICE SPK kernels from ISIS cubes
stats Generates statistics about a cube
std2isis Imports a cube from PNG, JPEG, JP2, BMP or TIFF format
stretch Remaps pixel values in a cube
sumspice Update ISIS start times, pointing and spacecraft position with Gaskell SPC SUMFILEs
svfilter Apply a variance or standard deviation filter to a cube
table2cube Converts a table to a cube
tabledump Program to output a selected table to a file
tgocassis2isis Imports a PDS4-formatted CaSSIS image into an ISIS-formatted cube.
tgocassismos Produce an output mosaic of TGO CaSSIS images from the same observation and filter.
tgocassisrdrgen Converts CaSSIS cubes into PDS 4 standard format
tgocassisstitch Stitch together multiple TGO CaSSIS framelets into full frame images.
tgocassisunstitch Unstitch a TGO CaSSIS full frame image into several TGO CaSSIS framelets.
thm2isis Import a Themis IR/VIS RDR or EDR
thmbasemap1 Mars Odyssey Themis RDR image cleanup
thmdriftcor Apply thermal drift correction to THEMIS images
thmnoseam Smooths the transitions between framelets.
thmproc Runs a Themis cube through the processing for levels 0 and/or 2
thmvisflat This program applies a flat field correction to Themis VIS Images
thmvistrim Trims data from framelets on Themis Vis images
tonematch Matches the tone of two, single-band images
trackextract Removes the tracking band from a mosaic and places it into a new tracking cube.
translate Translate an image by given sample and line translation values
trim Trim edges of input cube
trimfilter Apply a trim filter to a cube
uncrop Puts a sub-cube back into its parent cube
vdcomp Uncompresses Voyager and Viking PDS files
vicar2isis Import Vicar image file into Isis format
vik2isis Import PDS formatted Viking EDR into Isis format cube
vikcal Radiometric correction of VIKING Planetary images
vikclean Clean-up of Viking Orbiter Level 1 images
vikfixtrx Fix null tracks in a Viking image plane
viknobutter Final step of Viking Orbiter Level 1 image clean-up
viknonoodle Remove periodic noise from a Viking image
viknopepper Pepper noise Clean-up of Viking Orbiter Level 1 images
viknosalt Initial Clean-up of Viking Orbiter Level 1 images
vims2isis Converts Vims images to Isis format
vimscal Radiometric correction of Cassini VIMS camera images.
voy2isis Import PDS formatted Voyager EDR into Isis format cube
voycal Radiometric correction of Voyager 1 and 2 planetary images
voyramp Corrects Voyager 1 Io images from plasma torus irradiation
warp Warp an image using a Control Network