Isis 2 Documentation

ISIS Program List - Menu Categories

asc2tbl	Translate TABLE from ASCII format to ISIS binary format
bandtab	Create a TABLE file of BAND_BIN information from a cube file
convert	Convert cube data format to different computer platforms
cube2ascii	Converts isis (1 band) to ascii output file
ddd2isis	Convert MOC ddd image to ISIS cube
dform	Convert ISIS cube to different format and bit-type
hdrkeys	Set keywords in Table file for ISL spectrum header info
isis2gisworld	Create GIS header and/or World file from a Level 2 ISIS cube
isis2pds	Convert ISIS cube file to standard PDS image file
isis2pics (PICS)	Copy spatial-spatial QUBE plane to PICS image
isis2std (IDL)	Convert ISIS cube to standard image file
isis2raw	Converts an ISIS cube into an unlabeled raw image
isis2tif	Convert an ISIS cube file to a Tagged Image File Format
msi2isis	Converts NEAR Discovery MSI images to ISIS cubes
nav2isis	Create ISIS IMP file list from PDS Navigator output
pds2isis	Convert PDS image file to ISIS cube file
pics2isis (PICS)	Insert PICS image into a Build 2 ISIS cube
plancd	Read JPL archive CD files and write to disk
rand2ck1	Convert camera angles in Rand format to Naif ckernel
raw2isis	Transfers raw images into an ISIS cube
readbackplane (IDL)	Read backplane of ISIS cube file into an IDL array
readisis (IDL)	Read ISIS cube file data into an IDL array
spam2isl	Convert a SPAM library to ISL format
specpr2isl	Convert a SPECPR library to ISL format
tbl2asc	Translate binary TABLE object to ASCII format
tbl2isl	Put Table file spectrum into an Instrument Spectral Library
transpose	Transpose standard 3D cube to requested storage order
writeisis (IDL)	Write IDL array out to the core of a new cube file
uax2isis	Convert IMP UAX format Pathfinder files to ISIS cubes

add_reseaux	Add reseaux information to a pixel measurement file
affinefit	Produce a reg file defining an affine transformation fit
automat	Finds overlap points of images
check_net	check that all images are connected by match points
chipper	Subpixel register a point in one image to point in another
coreg	Subpixel registration of a pair of images
coreg2	Subpixel registration of a pair of images
coregpr	Create control point file with 1/5 pixel registration
coregpr2	Create control point file with 1/5 pixel registration
dtmradius	Update a RAND control point file with radii from a DTM
findmatch	Create pdf for MATCHPT of overlapping Clementine images
findmatch2500
genapdat	Generates a priori data for a randlsq solution.
lab2mat	Copy match points from labels to table file
lev1matcherr	Report matchpoint errors for a set of level1 cubes
makeground	Create ground points from match point sets, cube list
mat2lab	Copy match points from table file to labels
matchpt	Calculates and records three match points for 2 images
matprt	List match table file
mea_replace	Merge/reformat millimeter measurements
mergempt	Merge two match point files into one
mpt_stats	Print descriptive statistics of qmatch file
pix2mm	Convert pixel measurements to millimeter measurements.
pntreg	Subpixel register list of match points
ppp_replace	Merge/reformat RAND PPP data
radar	Rand radar least squares solution
rand2kerns
randlsq	Perform photogrammetric adjustment
runrandlsq	Runs randlsq, the geodetic solver.
shiftreg	Shift image by a line and sample offset
subpreg	"Rubber sheet" sub-pixel registration of two images
tprint	List information from the "tfile"
worst_res	Convert randlsq residuals to an easy-to-read format

automos	Mosaic a list of image files
base	Project base mosaic to LEVEL1 image format
base2l1	Create TFILE to project a mosaic to "level1" geometry
deltack	Make angular adjustments to camera pointing and create CK
geom	Geometric transformation of image planes in an ISIS cube file
getrange	Get latitude and longitude range of a list of images
grid	Draw a grid on a cube
daisy	Create a "flower petal" projection for globes
imp2prj	Create TFILE for Mars Pathfinder IMP cube map projections
lev1stats	Generates geometric statistics for a cube
lev1tolev1	Match two level 1 images
lev1tolev2	Make tfile for level 1 to level 2 conversion
lev2grid	Create file for plotting graticules(PostScript).
lev2lab	Put map projection information on cube labels
lev2tolev2	Make tfile for level 2 to level 2 conversion
lev2raster	Rasterize data using latitude, longitude coordinates
levinit	Initialize the processing information on the labels
magcube	Scale cube up or down using bilinear interpolator
maplab	Put map projection information on cube labels
mosaic	Mosaic cubes
mospdf	Creates a PDF procedure that runs "mosaic"
newmap	Change geometry of sinusoidal or simple cyclindrical image
nuproj	Create a tfile for map transformations
planorth	Create TFILE for Planetary cubes in Orthographic
plansinu	Create TFILE for Planetary cubes in Sinusoidal
planspace	Create TFILE for plotting Right ascension and Declination
pointvu	Project undistorted point perspective with topography
random	Transform image with random control
rasrange	Determine lat/lon range of raster data
regcolor	Find common lat,lon range and project to SINU or ORTH
size	Compute map size
tesmap	Generate projected ISIS file from TES (vanna/vanilla) data
tiept	Correct camera pointing using image correlation
tprint	List information from the "tfile"
trimang	Trim input image by an angular amount
trimangle	Trim a cube to an angle.
trimsinu	Trim edges of Sinusoidal images
warp2	Transform cube with weighted 2nd order fit
warp3	Interpolate values in the third (brightness) dimension

findrx	Find Reseau coordinates and write them to the label
geoback	Create backplanes with geometric information
jigsaw	Correct camera angles on the labels of a group of images
lab2spice	Update SPICE file from data on cube labels
lev_findrx	Find Reseau coordinates and write them to the label
lev1geoplane	Write geometry information to backplanes or new cube.
lev1prop	Propagate level 1 keyword groups to another file
levpt	Generate geometric information for a point(s) in a cube
lev1torand	Generate RAND information for a point in a level1 cube
levgeoplane	Write geometry information to backplanes or new cube.
mergermb	Merge entries from one geometry spice table into another
mkreseau	Create RAND listing of reseaus
naiflab	Add "SPICE" data to cube labels from NAIF kernel files
noproj	Compute camera distortions.
photostat	Give geometric information about the image
planlab	Updates planet information on image labels
remrx	Remove Reseaus from an input image
sedrsort	Sort entries in a table of photostatistics (sedr)
shiftcube	Shift camera pointing for a single cube
shiftorb	Shift camera angles for an orbit
spice2rand	Convert SPICE and match points to RAND format
spice2rand11000
spicelab	Update SPICE on cube labels
spiceprt	List information from the SPICE files
trimang	Trim input image by an angular amount
trimangle	Trim a cube to an angle.

cubelook	Interactively examine and replace cube pixel values
bin5r (IDL)	Read a BIN5 format file into an IDL array
bin5w (IDL)	Write an IDL array to a BIN5 format file
cv (IDL)	Interactive Cube Visuslization
cvplot (IDL)	Interactive Cube Visualization plot program
example (IDL)	Illustrates how to access ISIS cube from IDL
isis2std (IDL)	Convert ISIS cube to standard image file
multiimp (IDL)	Run "tvimp" to process list of IMP images
multimatch (IDL)	Run "tvtie" to process "matchpt" output list
tvimp (IDL)	Set match points for Imager for Mars Pathfinder (IMP) image
tvtie (IDL)	Interactive setting of tie points or match points.
viewspec (IDL)	Display ISIS cube or generic cube file
wimp (IDL)	Widget interface to run "tvimp"
wmatch (IDL)	Widget interface to run "tvtie" in MATCH POINT mode
wtie (IDL)	Widget interface to run "tvtie" in TIE POINT mode
pc2d	Perform interactive photoclinometry
qmatch	Interactive match point picking program
qview	Display cube

add	add a band or a cube to a cube
addspec	Add a spectrum to a cube
blend	Apply polynomial correlation function to an image
fit	Compute polynomial functions, Y(X), to correlate two images
fx	Generalized arithmetic operations using multiple cube files
linfit	Perform linear least squares fit of one image to other image(s)
mult	multiply a cube by a band
multcs	Compute product of cube and spectrum from a table file
poly	Polynomial algebra on an input cube
polyfit	Find coefficients of polynomial fit at each pixel
ratio	Ratio each spatial plane by a given spatial plane
ratiocs	Compute ratio of cube and spectrum from a table file
tuple	Create list of corresponding DN values from multiple images

calmrg	Level1 / merge exposure pairs for Clementine LUB filter
clem0	(Level 0) First step processing for Clementine data
clem2isis	Converts compressed Clementine images to ISIS cubes
clemchange	Convert a qmatch list of Clem. pixel measurements to mm
clemgroup	Get all filters in same area as one filter
clempair	Create list of cubes to process sorted by exposure pairs
clemphot	Photometric correction for Clementine UVVIS images
clemprod	Provides services for Clementine Product Id Master Database
expmrg	level1 / merge exposure pairs for Clementine (any filters)
findmatch	Create pdf for MATCHPT of overlapping Clementine images
findmatch2500
getcol	Return index(th) filename to calling procedure
hilomatch	Match Clementine uvvis high exposure to low exposure
month1_2	Apply phase angle correction to selected bands
nomrgfile	"echo" information to output file for CALMRG.PDF
photbug	Apply phase angle correction to selected bands
pointfix	Correct camera pointing
specmsk	special masking procedure
specundo	"undo" the special masking procedure
unfazed	Undo phase correction
uvviscal	Radiometric correction of Clementine UV/VIS camera images

iss2isis	Convert Vicar-formatted Cassini ISS images to ISIS format
isschange	Convert a qmatch list of pixel measurements to mm

rad2isis	Convert PDS-formatted Cassini BIDR Radar files to ISIS format
sbdr2isis	Convert Cassini SBDR table to an ISIS table
sbdr2grid	Rasterize Cassini SBDR data from an ISIS table

change_4	Convert a qmatch list of Clem. pixel measurements to mm
gllfixlabel	Update the labels in a GALILEO SSI image
ssical	Perform Radiometric correction on GALILEO-SSI Imaging
summation_mode	Convert pix measurements to mm (Gal Summation Mode)

fixlucas	Converts Lucas Point Perspective labels to ISIS labels
hdr_convert	Convert hardware configuration of NIMS HDR file
nimsboomsten	Stencil boom obscuration in a NIMS "tube"
nimsgeom	Project NIMS data to map projection
nimsgeoplane	Create NIMS geom. backplanes for all grating positions
nimstplane	Create x,y (map) backplanes for NIMS data for all grating
radfloat	Float band-dependent-scaled NIMS radiance cube
spicegen	Create SPICE file from GLL SP kernel and raw AACS
vlonorm	Variable length offset normalization of each spectrum

imp2prj	Create TFILE for Mars Pathfinder IMP cube map projections
imp_fixlabel	Update the labels in an IMP image
implab	Limited corrections to the label of IMP images.
imprange	Do stereo range calculations for IMP images
last2prj	Create TFILE for LANDER STEREO (LAST) cube map projections
lastjig	Correct camera angles on the labels of a group of LAST images
lostpckt	Find lost packets (dropped compression blocks) in IMP
multiimp (IDL)	Run "tvimp" to process list of IMP images
nav2isis	Create ISIS IMP file list from PDS Navigator output
runimp	runs the imprange and tbl2asc programs
socet2jig	Convert ISIS labels and SOCET match points to lastjig format
tvimp (IDL)	Set match points for Imager for Mars Pathfinder (IMP) image
uax2isis	Convert IMP UAX format Pathfinder files to ISIS cubes
wimp (IDL)	Widget interface to run "tvimp"

lochange	Convert a qmatch list of pixel measurements to mm
lofixlabel	Update the labels in a Lunar Orbiter complete frame.
lomarkfid	Mark the fiducials in a Lunar Orbiter cube
losupport2ck1	Convert Lunar Orbiter az, tilt, & swing to NAIF ck
makespk09	Convert Lunar Orbiter support data to Naif spk

bef	Bit Error Filtering Program
linearize	Linearize Mariner 9 images
m9mlrp	Mariner 9 Missing Line Repair Program
m9psr	Mariner 9 pinstripe removal
m9radiom	Mariner 9 Radiometric Correction
m9res	Subtracts residual image from Mariner 9 images
mr9fixlabel	Update the labels in a Mariner 9 image

makinfocus	Make projection plane def file from initialized MI or PANCAM cube
mer2isis	Convert MER flight/calibration images to ISIS format
mer2pds	Convert MER flight/calibration images to PDS format
merfixlab	Fix keywords in MER level 1 image labels
merlevinit	Initialize the processing information on the labels
merlevpt	Generate geometric information for a point(s) in a cube
mermos	Mermos cubes
merlev1tolev2	Make tfile for level 1 to level 2 conversion

getutc	Convert ephemeris time to UTC format
hrscfill	Fill in missing lines of a MEX HRSC image
hrscsep	Separate MEX HRSC file into individual parts
mex2isis	Convert Vicar-formatted MEX images to ISIS format
readpfx	Read prefix bytes in a MEX HRSC file

maketopo	Create topo file for any planet
mar10cal	Radiometric correction of Mariner 10 images (Experimental)
msi2isis	Converts NEAR Discovery MSI images to ISIS cubes

ddd2isis	Convert MOC ddd image to ISIS cube
mgstime	convert between different MGS time formats
moc_fixlabel	Update the labels in an MGS MOC image
mocaspect	Perform aspect ratio correction of MOC Level1 image
mocbtbl	Create table file of "lev1stats" output
moccal	Radiometric correction of Mars Global Surveyor MOC images
mocevenodd	Remove even/odd from MOC images
mocftp	Download MOC images or MOLA pedr data
mocgap	Fix data gap in MOC images
mocindex	List image information found in the cumindex.tab file
moclev0	Convert PDS MOC images to ISIS format
moclev1	Perform radiometric correction on MOC images
moclev2	Project Level 1 MOC image to a map projection
moclevall	Process MOC images thru moclev0,moclev1 & moclev2
mocmola	Create MOLA table file based on MOC image time
mocnawa	mosaic MOC NA & WA level2 simultaneous frames
mocnoise50	Remove noise spikes from MOC images
mocrange	Apply range of MOC statistics to ISIS table file
mocsearch	search for a select set of PDS MOC images by range contraints
moctime	Find the time span of a MOC image
mola2isis	Create MOLA table file based on MOC image and pedr
molasearch	Find MOLA PEDR filenames for specified time range
readmocisis	Decompress an MGS/MOC SDP file to create a PDS image
readmocdrvisis	Driver for the MGS/MOC readmocisis program

msi2isis	Converts NEAR Discovery MSI images to ISIS cubes
nearq2cam	Convert quaternions to camera angles for NEAR

tesemiss	Retrieve TES Emissivity data from vanilla database
tesmap	Generate projected ISIS file from TES (vanna/vanilla) data
vanna	User interface to the ASU vanilla application

bandfloat	Apply separate base/multiplier to each band in a cube
thm2isis	Convert THEMIS IR/VIS images to ISIS for lev processing
thmiric	Generate THEMIS IR registered instrument coordinate cubes
thmirmc	Generate THEMIS IR registered map projection cubes
thmirmcdrv	Generate THEMIS IR registered map projection cubes
thmvismc	Generate THEMIS VIS registered map projection cubes
thmvismcdrv	Generate THEMIS VIS registered map projection cubes

cleanrx	Remove low level of noise from image plane
fixtrx	Fix null tracks in a Viking image plane
hicut	Show actual area covered by each image in a Mars 1:500k mosaic
hidim	Create procedures for high resolution Mars mapping project
hilev3a	Create two groups of HPF files for Mars 1:500k mapping
hilev3b	Mosaic HILEV3A output images for Mars 1:500k mapping project
hilev4	Add HPF mosaic and LPF mosaic for Mars 1:500k mapping
outline	outline distinct DN sections in an image
new_voyager	Convert a qmatch list of Vik. pixel measurements to mm
slosin	Remove periodic noise from LEVEL1 images
vgrfixlabel	Update the labels in a VOYAGER ISS image
vik7track	Zero Missing track information in EDR Viking image
vikbasefit	Create a ck by fitting camera pointing to base map
vikcal	Radiometric correction of VIKING Planetary images
vikftp	Download Viking Orbiter EDR images
viklev0	Convert Viking Orbiter images to ISIS cub
viklev1	Create calibrated Viking Oriter Level 1 images
vlev1	Level 1 processing for Viking and Voyager data
voycal	Radiometric correction of Planetary images
voyfixlabel	Update the labels in a VOYAGER ISS image
voyramp	Correct Voyager 1 Io images from plasma torus irradiation
xypxy0vik	Convert qmatch Vik. pixel measurements to mm

average (PICS)	Obtain averages of an image sub-area
b16mad (PICS)	Perform algebra on 16 bit images
cd2isis (PICS)	Convert PDS CDROM compressed and uncompressed image to ISIS
cd2pics (PICS)	Convert PDS CDROM compressed and uncompressed image to PICS
hist (PICS)	Create histogram of image
isis2pics (PICS)	Copy spatial-spatial QUBE plane to PICS image
list (PICS)	List area of image
mad (PICS)	Perform algebra on 8 bit images
mask (PICS)	Pixels outside range MIN and MAX are set to null
outlin (PICS)	outline distinct DN sections in an image
pics2isis (PICS)	Insert PICS image into a Build 2 ISIS cube
picslabels (PICS)	Lists or modifies image labels
shade (PICS)	Create shaded relief image from topographic image

isisdoc	Create formatted documentation of programs and procedures
mappars	Extensive description of MAPPARS parameter
orange	Detailed description of ORANGE parameter
sfrom	Extensive description of SFROM parameter

b4equal	Find statistics about cubes for use by EQUALIZER
chardip	Create a unit tilt toward sun file
cosi	Divide by cos(incidence angle) from backplane
desmear	Remove frame transfer smear
equalizer	Write PDF to correct brightness differences between cubes
levsetlab	Set the PHOTO_DEM keyword in image labels
makeflat	Creates a flat-field image from a set of input images
mar10cal	Radiometric correction of Mariner 10 images (Experimental)
pcinfo	Calculate information needed for photoclinometry
pcsi	Two dimensional photoclinometry "smart interpolation".
pho_emp_global	Fit empirical photometric functions to Hapke
pho_emp_local	Fit empirical photometric functions to Hapke
photom	Apply photometric correction
photomet	Perform photometric corrections on a cube.
photompr	Photometric Correction Parameters
shadco	Add shaded relief to color cube
shade	Create shaded-relief cube from topographic cube
shadowtau	get shadow stats.
ssical	Perform Radiometric correction on GALILEO-SSI Imaging
uvviscal	Radiometric correction of Clementine UV/VIS camera images
vikcal	Radiometric correction of VIKING Planetary images
voycal	Radiometric correction of Planetary images

boxfilter	Three dimensional boxcar filter on cube data
dstripe	Destripe image using a sequence of boxcar filters
noseam	Level 4 / Boxfilter (LPF,HPF) mosaic seam removal
stddes	Standard set of destriping filters for clinometry

addspec	Add a spectrum to a cube
back2core	Transfer set of backplanes to core of a new cube file
bndsynprc	Synthesize missing image data for three bands of a cube
cubespec	Calculate average spectrum from disk cube file
eanorm	Equal area normalization of each spectrum
hdrkeys	Set keywords in Table file for ISL spectrum header info
islist	List spectral header fields from ISL file
lincont	Linear continuum removal of each spectrum
ratiocs	Compute ratio of cube and spectrum from a table file
roilist	List pixel values within a Region of Interest
solardiv	Divide/Multiply by BAND_BIN_SOLAR_FLUX from label
spam2isl	Convert a SPAM library to ISL format
specpr2isl	Convert a SPECPR library to ISL format
tbl2isl	Put Table file spectrum into an Instrument Spectral Library
unmix	Spectral unmixing
vlonorm	Variable length offset normalization of each spectrum

avg_sd	Compute the average and/or standard deviation of a cube
bandstats	Compute statistics for individual bands
cubespec	Calculate average spectrum from disk cube file
hist2d	Compute 2-D histogram
histplane	Create histogram(s) of image bands in a cube.
lev1stats	Generates geometric statistics for a cube
roilist	List pixel values within a Region of Interest

bin2str	Convert INTEGER and/or REAL values to strings
getcol	Return index(th) filename to calling procedure
getfname	Return index(th) filename to calling procedure
getfname5	Return 5 filenames on index(th) line to calling procedure
getkey	Get keyword value(s) from a cube file label
str2int	Convert a numeric string to integer
submit	Submit a TAE batch file

back2core	Transfer set of backplanes to core of a new cube file
bandcopy	Copy core band or backplane of cube into another cube
check_net	check that all images are connected by match points
circle	NULL area outside a given circle
cleanlab	Attempts to set FILE_STATE to CLEAN
convert	Convert cube data format to different computer platforms
cosi	Divide by cos(incidence angle) from backplane
cpylab	Copies keyword labels from one file to another
cubeavg	Creates a spectral average cube
cubeit	Stack image cubes together in the band dimension.
cubelook	Interactively examine and replace cube pixel values
cubestack	Stacks two input cube files in the LINE dimension
dsk2dsk	Determine or set the valid core data range
errors	Find errors in ISIS session log file (print.prt)
getcirc	Compute the center line, sample and radius
getcol	Return index(th) filename to calling procedure
getcount	Count number of lines in ascii list file
hstret	Calculate stretch table from histograms of each band
isis2std (IDL)	Convert ISIS cube to standard image file
isisdiff	Compute difference statistics between two cubes.
isisinfo	Report detailed information about an ISIS file
isisparam	Pass parameter values back to the calling shell
labels	Lists or modifies CUBE or TABLE file labels
list	List DN values for a single band/backplane
mask	Mask cube with single core band, all core bands or a backplane
mirror	flips a cube from left-to-right
nullsat	NULL area outside a given circle
pathtool	Search and replace paths in ISIS keyword labels
photosort	Sort a list of images based on photo statistic constraints
readbackplane (IDL)	Read backplane of ISIS cube file into an IDL array
readisis (IDL)	Read ISIS cube file data into an IDL array
roilist	List pixel values within a Region of Interest
rot180	rotates a cube clockwise 180 degrees
spatialmax	Find the file with the largest spatial region
specpix	Replace user specified pixels with special pixel values
stretch	Stretch pixel values in a cube file
tic	Write tic marks on a cube
tprint	List information from the "tfile"
transpose	Transpose standard 3D cube to requested storage order
trim	NULL the edges of a cube
writeisis (IDL)	Write IDL array out to the core of a new cube file
zero	Create a cube and fill with a constant value (default 0)

This page contains a menu of all ISIS programs. Click on a program name to get complete user documentation on the program
NOTE: All programs are invoked through TAE unless specified as IDL
[Data Translators]
[Geometric Control and Image Coregistration]
[Image Geometry, Map Projection and Mosaicking]
[Instrument Behavior and Geometry]
[Interactive Display]
[Math]
[Mission Specific - Clementine]
[Mission Specific - Galileo_SSI]
[Mission Specific - Galileo_NIMS]
[Mission Specific - Cassini_ISS]
[Mission Specific - Cassini_Radar]
[Mission Specific - IMP]
[Mission Specific - Lunar Orbiter]
[Mission Specific - Mariner9]
[Mission Specific - MER]
[Mission Specific - MEX]
[Mission Specific - Miscellaneous]
[Mission Specific - MOC]
[Mission Specific - NEAR]
[Mission Specific - TES]
[Mission Specific - THEMIS]
[Mission Specific - Viking / Voyager]
[PICS]
[Program Documentation]
[Radiometric Correction and Photometry]
[Spatial Filters]
[Spectral Processing and Image Classification]
[Statistics]
[TAE Functions]
[Utility]
Data Translators

asc2tbl Translate TABLE from ASCII format to ISIS binary format
bandtab Create a TABLE file of BAND_BIN information from a cube file
convert Convert cube data format to different computer platforms
cube2ascii Converts isis (1 band) to ascii output file
ddd2isis Convert MOC ddd image to ISIS cube
dform Convert ISIS cube to different format and bit-type
hdrkeys Set keywords in Table file for ISL spectrum header info
isis2gisworld Create GIS header and/or World file from a Level 2 ISIS cube
isis2pds Convert ISIS cube file to standard PDS image file
isis2pics (PICS) Copy spatial-spatial QUBE plane to PICS image
isis2std (IDL) Convert ISIS cube to standard image file
isis2raw Converts an ISIS cube into an unlabeled raw image
isis2tif Convert an ISIS cube file to a Tagged Image File Format
msi2isis Converts NEAR Discovery MSI images to ISIS cubes
nav2isis Create ISIS IMP file list from PDS Navigator output
pds2isis Convert PDS image file to ISIS cube file
pics2isis (PICS) Insert PICS image into a Build 2 ISIS cube
plancd Read JPL archive CD files and write to disk
rand2ck1 Convert camera angles in Rand format to Naif ckernel
raw2isis Transfers raw images into an ISIS cube
readbackplane (IDL) Read backplane of ISIS cube file into an IDL array
readisis (IDL) Read ISIS cube file data into an IDL array
spam2isl Convert a SPAM library to ISL format
specpr2isl Convert a SPECPR library to ISL format
tbl2asc Translate binary TABLE object to ASCII format
tbl2isl Put Table file spectrum into an Instrument Spectral Library
transpose Transpose standard 3D cube to requested storage order
writeisis (IDL) Write IDL array out to the core of a new cube file
uax2isis Convert IMP UAX format Pathfinder files to ISIS cubes

Geometric Control and Image Coregistration

add_reseaux Add reseaux information to a pixel measurement file
affinefit Produce a reg file defining an affine transformation fit
automat Finds overlap points of images
check_net check that all images are connected by match points
chipper Subpixel register a point in one image to point in another
coreg Subpixel registration of a pair of images
coreg2 Subpixel registration of a pair of images
coregpr Create control point file with 1/5 pixel registration
coregpr2 Create control point file with 1/5 pixel registration
dtmradius Update a RAND control point file with radii from a DTM
findmatch Create pdf for MATCHPT of overlapping Clementine images
findmatch2500
genapdat Generates a priori data for a randlsq solution.
lab2mat Copy match points from labels to table file
lev1matcherr Report matchpoint errors for a set of level1 cubes
makeground Create ground points from match point sets, cube list
mat2lab Copy match points from table file to labels
matchpt Calculates and records three match points for 2 images
matprt List match table file
mea_replace Merge/reformat millimeter measurements
mergempt Merge two match point files into one
mpt_stats Print descriptive statistics of qmatch file
pix2mm Convert pixel measurements to millimeter measurements.
pntreg Subpixel register list of match points
ppp_replace Merge/reformat RAND PPP data
radar Rand radar least squares solution
rand2kerns
randlsq Perform photogrammetric adjustment
runrandlsq Runs randlsq, the geodetic solver.
shiftreg Shift image by a line and sample offset
subpreg "Rubber sheet" sub-pixel registration of two images
tprint List information from the "tfile"
worst_res Convert randlsq residuals to an easy-to-read format

Image Geometry, Map Projection and Mosaicking

automos Mosaic a list of image files
base Project base mosaic to LEVEL1 image format
base2l1 Create TFILE to project a mosaic to "level1" geometry
deltack Make angular adjustments to camera pointing and create CK
geom Geometric transformation of image planes in an ISIS cube file
getrange Get latitude and longitude range of a list of images
grid Draw a grid on a cube
daisy Create a "flower petal" projection for globes
imp2prj Create TFILE for Mars Pathfinder IMP cube map projections
lev1stats Generates geometric statistics for a cube
lev1tolev1 Match two level 1 images
lev1tolev2 Make tfile for level 1 to level 2 conversion
lev2grid Create file for plotting graticules(PostScript).
lev2lab Put map projection information on cube labels
lev2tolev2 Make tfile for level 2 to level 2 conversion
lev2raster Rasterize data using latitude, longitude coordinates
levinit Initialize the processing information on the labels
magcube Scale cube up or down using bilinear interpolator
maplab Put map projection information on cube labels
mosaic Mosaic cubes
mospdf Creates a PDF procedure that runs "mosaic"
newmap Change geometry of sinusoidal or simple cyclindrical image
nuproj Create a tfile for map transformations
planorth Create TFILE for Planetary cubes in Orthographic
plansinu Create TFILE for Planetary cubes in Sinusoidal
planspace Create TFILE for plotting Right ascension and Declination
pointvu Project undistorted point perspective with topography
random Transform image with random control
rasrange Determine lat/lon range of raster data
regcolor Find common lat,lon range and project to SINU or ORTH
size Compute map size
tesmap Generate projected ISIS file from TES (vanna/vanilla) data
tiept Correct camera pointing using image correlation
tprint List information from the "tfile"
trimang Trim input image by an angular amount
trimangle Trim a cube to an angle.
trimsinu Trim edges of Sinusoidal images
warp2 Transform cube with weighted 2nd order fit
warp3 Interpolate values in the third (brightness) dimension

Instrument Behavior and Geometry

findrx Find Reseau coordinates and write them to the label
geoback Create backplanes with geometric information
jigsaw Correct camera angles on the labels of a group of images
lab2spice Update SPICE file from data on cube labels
lev_findrx Find Reseau coordinates and write them to the label
lev1geoplane Write geometry information to backplanes or new cube.
lev1prop Propagate level 1 keyword groups to another file
levpt Generate geometric information for a point(s) in a cube
lev1torand Generate RAND information for a point in a level1 cube
levgeoplane Write geometry information to backplanes or new cube.
mergermb Merge entries from one geometry spice table into another
mkreseau Create RAND listing of reseaus
naiflab Add "SPICE" data to cube labels from NAIF kernel files
noproj Compute camera distortions.
photostat Give geometric information about the image
planlab Updates planet information on image labels
remrx Remove Reseaus from an input image
sedrsort Sort entries in a table of photostatistics (sedr)
shiftcube Shift camera pointing for a single cube
shiftorb Shift camera angles for an orbit
spice2rand Convert SPICE and match points to RAND format
spice2rand11000
spicelab Update SPICE on cube labels
spiceprt List information from the SPICE files
trimang Trim input image by an angular amount
trimangle Trim a cube to an angle.

Interactive Display

cubelook Interactively examine and replace cube pixel values
bin5r (IDL) Read a BIN5 format file into an IDL array
bin5w (IDL) Write an IDL array to a BIN5 format file
cv (IDL) Interactive Cube Visuslization
cvplot (IDL) Interactive Cube Visualization plot program
example (IDL) Illustrates how to access ISIS cube from IDL
isis2std (IDL) Convert ISIS cube to standard image file
multiimp (IDL) Run "tvimp" to process list of IMP images
multimatch (IDL) Run "tvtie" to process "matchpt" output list
tvimp (IDL) Set match points for Imager for Mars Pathfinder (IMP) image
tvtie (IDL) Interactive setting of tie points or match points.
viewspec (IDL) Display ISIS cube or generic cube file
wimp (IDL) Widget interface to run "tvimp"
wmatch (IDL) Widget interface to run "tvtie" in MATCH POINT mode
wtie (IDL) Widget interface to run "tvtie" in TIE POINT mode
pc2d Perform interactive photoclinometry
qmatch Interactive match point picking program
qview Display cube

Math

add add a band or a cube to a cube
addspec Add a spectrum to a cube
blend Apply polynomial correlation function to an image
fit Compute polynomial functions, Y(X), to correlate two images
fx Generalized arithmetic operations using multiple cube files
linfit Perform linear least squares fit of one image to other image(s)
mult multiply a cube by a band
multcs Compute product of cube and spectrum from a table file
poly Polynomial algebra on an input cube
polyfit Find coefficients of polynomial fit at each pixel
ratio Ratio each spatial plane by a given spatial plane
ratiocs Compute ratio of cube and spectrum from a table file
tuple Create list of corresponding DN values from multiple images

Mission Specific - Clementine

calmrg Level1 / merge exposure pairs for Clementine LUB filter
clem0 (Level 0) First step processing for Clementine data
clem2isis Converts compressed Clementine images to ISIS cubes
clemchange Convert a qmatch list of Clem. pixel measurements to mm
clemgroup Get all filters in same area as one filter
clempair Create list of cubes to process sorted by exposure pairs
clemphot Photometric correction for Clementine UVVIS images
clemprod Provides services for Clementine Product Id Master Database
expmrg level1 / merge exposure pairs for Clementine (any filters)
findmatch Create pdf for MATCHPT of overlapping Clementine images
findmatch2500
getcol Return index(th) filename to calling procedure
hilomatch Match Clementine uvvis high exposure to low exposure
month1_2 Apply phase angle correction to selected bands
nomrgfile "echo" information to output file for CALMRG.PDF
photbug Apply phase angle correction to selected bands
pointfix Correct camera pointing
specmsk special masking procedure
specundo "undo" the special masking procedure
unfazed Undo phase correction
uvviscal Radiometric correction of Clementine UV/VIS camera images

Mission Specific - Cassini_ISS

iss2isis Convert Vicar-formatted Cassini ISS images to ISIS format
isschange Convert a qmatch list of pixel measurements to mm

Mission Specific - Cassini_Radar

rad2isis Convert PDS-formatted Cassini BIDR Radar files to ISIS format
sbdr2isis Convert Cassini SBDR table to an ISIS table
sbdr2grid Rasterize Cassini SBDR data from an ISIS table

Mission Specific - Galileo_SSI

change_4 Convert a qmatch list of Clem. pixel measurements to mm
gllfixlabel Update the labels in a GALILEO SSI image
ssical Perform Radiometric correction on GALILEO-SSI Imaging
summation_mode Convert pix measurements to mm (Gal Summation Mode)

Mission Specific - Galileo_NIMS

fixlucas Converts Lucas Point Perspective labels to ISIS labels
hdr_convert Convert hardware configuration of NIMS HDR file
nimsboomsten Stencil boom obscuration in a NIMS "tube"
nimsgeom Project NIMS data to map projection
nimsgeoplane Create NIMS geom. backplanes for all grating positions
nimstplane Create x,y (map) backplanes for NIMS data for all grating
radfloat Float band-dependent-scaled NIMS radiance cube
spicegen Create SPICE file from GLL SP kernel and raw AACS
vlonorm Variable length offset normalization of each spectrum

Mission Specific - IMP

imp2prj Create TFILE for Mars Pathfinder IMP cube map projections
imp_fixlabel Update the labels in an IMP image
implab Limited corrections to the label of IMP images.
imprange Do stereo range calculations for IMP images
last2prj Create TFILE for LANDER STEREO (LAST) cube map projections
lastjig Correct camera angles on the labels of a group of LAST images
lostpckt Find lost packets (dropped compression blocks) in IMP
multiimp (IDL) Run "tvimp" to process list of IMP images
nav2isis Create ISIS IMP file list from PDS Navigator output
runimp runs the imprange and tbl2asc programs
socet2jig Convert ISIS labels and SOCET match points to lastjig format
tvimp (IDL) Set match points for Imager for Mars Pathfinder (IMP) image
uax2isis Convert IMP UAX format Pathfinder files to ISIS cubes
wimp (IDL) Widget interface to run "tvimp"

Mission Specific - Lunar Orbiter

lochange Convert a qmatch list of pixel measurements to mm
lofixlabel Update the labels in a Lunar Orbiter complete frame.
lomarkfid Mark the fiducials in a Lunar Orbiter cube
losupport2ck1 Convert Lunar Orbiter az, tilt, & swing to NAIF ck
makespk09 Convert Lunar Orbiter support data to Naif spk

Mission Specific - Mariner9

bef Bit Error Filtering Program
linearize Linearize Mariner 9 images
m9mlrp Mariner 9 Missing Line Repair Program
m9psr Mariner 9 pinstripe removal
m9radiom Mariner 9 Radiometric Correction
m9res Subtracts residual image from Mariner 9 images
mr9fixlabel Update the labels in a Mariner 9 image

Mission Specific - MER

makinfocus Make projection plane def file from initialized MI or PANCAM cube
mer2isis Convert MER flight/calibration images to ISIS format
mer2pds Convert MER flight/calibration images to PDS format
merfixlab Fix keywords in MER level 1 image labels
merlevinit Initialize the processing information on the labels
merlevpt Generate geometric information for a point(s) in a cube
mermos Mermos cubes
merlev1tolev2 Make tfile for level 1 to level 2 conversion

Mission Specific - MEX

getutc Convert ephemeris time to UTC format
hrscfill Fill in missing lines of a MEX HRSC image
hrscsep Separate MEX HRSC file into individual parts
mex2isis Convert Vicar-formatted MEX images to ISIS format
readpfx Read prefix bytes in a MEX HRSC file

Mission Specific - Miscellaneous

maketopo Create topo file for any planet
mar10cal Radiometric correction of Mariner 10 images (Experimental)
msi2isis Converts NEAR Discovery MSI images to ISIS cubes

Mission Specific - MOC

ddd2isis Convert MOC ddd image to ISIS cube
mgstime convert between different MGS time formats
moc_fixlabel Update the labels in an MGS MOC image
mocaspect Perform aspect ratio correction of MOC Level1 image
mocbtbl Create table file of "lev1stats" output
moccal Radiometric correction of Mars Global Surveyor MOC images
mocevenodd Remove even/odd from MOC images
mocftp Download MOC images or MOLA pedr data
mocgap Fix data gap in MOC images
mocindex List image information found in the cumindex.tab file
moclev0 Convert PDS MOC images to ISIS format
moclev1 Perform radiometric correction on MOC images
moclev2 Project Level 1 MOC image to a map projection
moclevall Process MOC images thru moclev0,moclev1 & moclev2
mocmola Create MOLA table file based on MOC image time
mocnawa mosaic MOC NA & WA level2 simultaneous frames
mocnoise50 Remove noise spikes from MOC images
mocrange Apply range of MOC statistics to ISIS table file
mocsearch search for a select set of PDS MOC images by range contraints
moctime Find the time span of a MOC image
mola2isis Create MOLA table file based on MOC image and pedr
molasearch Find MOLA PEDR filenames for specified time range
readmocisis Decompress an MGS/MOC SDP file to create a PDS image
readmocdrvisis Driver for the MGS/MOC readmocisis program

Mission Specific - NEAR

msi2isis Converts NEAR Discovery MSI images to ISIS cubes
nearq2cam Convert quaternions to camera angles for NEAR

Mission Specific - TES

tesemiss Retrieve TES Emissivity data from vanilla database
tesmap Generate projected ISIS file from TES (vanna/vanilla) data
vanna User interface to the ASU vanilla application

Mission Specific - THEMIS

bandfloat Apply separate base/multiplier to each band in a cube
thm2isis Convert THEMIS IR/VIS images to ISIS for lev processing
thmiric Generate THEMIS IR registered instrument coordinate cubes
thmirmc Generate THEMIS IR registered map projection cubes
thmirmcdrv Generate THEMIS IR registered map projection cubes
thmvismc Generate THEMIS VIS registered map projection cubes
thmvismcdrv Generate THEMIS VIS registered map projection cubes

Mission Specific - Viking / Voyager

cleanrx Remove low level of noise from image plane
fixtrx Fix null tracks in a Viking image plane
hicut Show actual area covered by each image in a Mars 1:500k mosaic
hidim Create procedures for high resolution Mars mapping project
hilev3a Create two groups of HPF files for Mars 1:500k mapping
hilev3b Mosaic HILEV3A output images for Mars 1:500k mapping project
hilev4 Add HPF mosaic and LPF mosaic for Mars 1:500k mapping
outline outline distinct DN sections in an image
new_voyager Convert a qmatch list of Vik. pixel measurements to mm
slosin Remove periodic noise from LEVEL1 images
vgrfixlabel Update the labels in a VOYAGER ISS image
vik7track Zero Missing track information in EDR Viking image
vikbasefit Create a ck by fitting camera pointing to base map
vikcal Radiometric correction of VIKING Planetary images
vikftp Download Viking Orbiter EDR images
viklev0 Convert Viking Orbiter images to ISIS cub
viklev1 Create calibrated Viking Oriter Level 1 images
vlev1 Level 1 processing for Viking and Voyager data
voycal Radiometric correction of Planetary images
voyfixlabel Update the labels in a VOYAGER ISS image
voyramp Correct Voyager 1 Io images from plasma torus irradiation
xypxy0vik Convert qmatch Vik. pixel measurements to mm

PICS - Programs that use PICS format 2d images

average (PICS) Obtain averages of an image sub-area
b16mad (PICS) Perform algebra on 16 bit images
cd2isis (PICS) Convert PDS CDROM compressed and uncompressed image to ISIS
cd2pics (PICS) Convert PDS CDROM compressed and uncompressed image to PICS
hist (PICS) Create histogram of image
isis2pics (PICS) Copy spatial-spatial QUBE plane to PICS image
list (PICS) List area of image
mad (PICS) Perform algebra on 8 bit images
mask (PICS) Pixels outside range MIN and MAX are set to null
outlin (PICS) outline distinct DN sections in an image
pics2isis (PICS) Insert PICS image into a Build 2 ISIS cube
picslabels (PICS) Lists or modifies image labels
shade (PICS) Create shaded relief image from topographic image

Program Documentation

isisdoc Create formatted documentation of programs and procedures
mappars Extensive description of MAPPARS parameter
orange Detailed description of ORANGE parameter
sfrom Extensive description of SFROM parameter

Radiometric Correction and Photometry

b4equal Find statistics about cubes for use by EQUALIZER
chardip Create a unit tilt toward sun file
cosi Divide by cos(incidence angle) from backplane
desmear Remove frame transfer smear
equalizer Write PDF to correct brightness differences between cubes
levsetlab Set the PHOTO_DEM keyword in image labels
makeflat Creates a flat-field image from a set of input images
mar10cal Radiometric correction of Mariner 10 images (Experimental)
pcinfo Calculate information needed for photoclinometry
pcsi Two dimensional photoclinometry "smart interpolation".
pho_emp_global Fit empirical photometric functions to Hapke
pho_emp_local Fit empirical photometric functions to Hapke
photom Apply photometric correction
photomet Perform photometric corrections on a cube.
photompr Photometric Correction Parameters
shadco Add shaded relief to color cube
shade Create shaded-relief cube from topographic cube
shadowtau get shadow stats.
ssical Perform Radiometric correction on GALILEO-SSI Imaging
uvviscal Radiometric correction of Clementine UV/VIS camera images
vikcal Radiometric correction of VIKING Planetary images
voycal Radiometric correction of Planetary images

Spatial Filters

boxfilter Three dimensional boxcar filter on cube data
dstripe Destripe image using a sequence of boxcar filters
noseam Level 4 / Boxfilter (LPF,HPF) mosaic seam removal
stddes Standard set of destriping filters for clinometry

Spectral Processing and Image Classification

addspec Add a spectrum to a cube
back2core Transfer set of backplanes to core of a new cube file
bndsynprc Synthesize missing image data for three bands of a cube
cubespec Calculate average spectrum from disk cube file
eanorm Equal area normalization of each spectrum
hdrkeys Set keywords in Table file for ISL spectrum header info
islist List spectral header fields from ISL file
lincont Linear continuum removal of each spectrum
ratiocs Compute ratio of cube and spectrum from a table file
roilist List pixel values within a Region of Interest
solardiv Divide/Multiply by BAND_BIN_SOLAR_FLUX from label
spam2isl Convert a SPAM library to ISL format
specpr2isl Convert a SPECPR library to ISL format
tbl2isl Put Table file spectrum into an Instrument Spectral Library
unmix Spectral unmixing
vlonorm Variable length offset normalization of each spectrum

Statistics

avg_sd Compute the average and/or standard deviation of a cube
bandstats Compute statistics for individual bands
cubespec Calculate average spectrum from disk cube file
hist2d Compute 2-D histogram
histplane Create histogram(s) of image bands in a cube.
lev1stats Generates geometric statistics for a cube
roilist List pixel values within a Region of Interest

TAE Functions

bin2str Convert INTEGER and/or REAL values to strings
getcol Return index(th) filename to calling procedure
getfname Return index(th) filename to calling procedure
getfname5 Return 5 filenames on index(th) line to calling procedure
getkey Get keyword value(s) from a cube file label
str2int Convert a numeric string to integer
submit Submit a TAE batch file

Utility

back2core Transfer set of backplanes to core of a new cube file
bandcopy Copy core band or backplane of cube into another cube
check_net check that all images are connected by match points
circle NULL area outside a given circle
cleanlab Attempts to set FILE_STATE to CLEAN
convert Convert cube data format to different computer platforms
cosi Divide by cos(incidence angle) from backplane
cpylab Copies keyword labels from one file to another
cubeavg Creates a spectral average cube
cubeit Stack image cubes together in the band dimension.
cubelook Interactively examine and replace cube pixel values
cubestack Stacks two input cube files in the LINE dimension
dsk2dsk Determine or set the valid core data range
errors Find errors in ISIS session log file (print.prt)
getcirc Compute the center line, sample and radius
getcol Return index(th) filename to calling procedure
getcount Count number of lines in ascii list file
hstret Calculate stretch table from histograms of each band
isis2std (IDL) Convert ISIS cube to standard image file
isisdiff Compute difference statistics between two cubes.
isisinfo Report detailed information about an ISIS file
isisparam Pass parameter values back to the calling shell
labels Lists or modifies CUBE or TABLE file labels
list List DN values for a single band/backplane
mask Mask cube with single core band, all core bands or a backplane
mirror flips a cube from left-to-right
nullsat NULL area outside a given circle
pathtool Search and replace paths in ISIS keyword labels
photosort Sort a list of images based on photo statistic constraints
readbackplane (IDL) Read backplane of ISIS cube file into an IDL array
readisis (IDL) Read ISIS cube file data into an IDL array
roilist List pixel values within a Region of Interest
rot180 rotates a cube clockwise 180 degrees
spatialmax Find the file with the largest spatial region
specpix Replace user specified pixels with special pixel values
stretch Stretch pixel values in a cube file
tic Write tic marks on a cube
tprint List information from the "tfile"
transpose Transpose standard 3D cube to requested storage order
trim NULL the edges of a cube
writeisis (IDL) Write IDL array out to the core of a new cube file
zero Create a cube and fill with a constant value (default 0)

Last updated: Mar 9 2006
File: isisprogs.html

Contact us online at the Isis Support Center: http://isisdist.wr.usgs.gov
ISIS Documentation Home Page

ISIS Program List - Menu Categories

Last updated: Mar 9 2006 File: isisprogs.html Contact us online at the Isis Support Center: http://isisdist.wr.usgs.gov ISIS Documentation Home Page

Last updated: Mar 9 2006
File: isisprogs.html

Contact us online at the Isis Support Center: http://isisdist.wr.usgs.gov
ISIS Documentation Home Page